Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 MIR1233-2-201ENST00000408138 82 ntBASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 MIR1233-1-201ENST00000408722 82 ntBASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 MIR4453-201ENST00000584019 89 ntBASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC39Q9UFE4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.89■□□□□ 0.46
CCDC39Q9UFE4 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
CCDC39Q9UFE4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.89■□□□□ 0.46
CCDC39Q9UFE4 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC39Q9UFE4 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC39Q9UFE4 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC39Q9UFE4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 SPDYE17-201ENST00000412399 783 ntBASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 MTND6P24-201ENST00000440466 518 ntBASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 DNAJB3-202ENST00000449667 1266 ntBASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 AL512356.2-201ENST00000546955 174 ntBASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CCDC39Q9UFE4 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC39Q9UFE4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC39Q9UFE4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms