Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 AL591424.1-201ENST00000442569 1213 ntBASIC13.7□□□□□ -0.22
MMP28Q9H239 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
MMP28Q9H239 AC092183.1-201ENST00000469884 875 ntBASIC13.7□□□□□ -0.22
MMP28Q9H239 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 AL691403.2-201ENST00000618460 490 ntBASIC13.7□□□□□ -0.22
MMP28Q9H239 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 AL139385.1-201ENST00000611744 3272 ntBASIC13.7□□□□□ -0.22
MMP28Q9H239 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
MMP28Q9H239 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MMP28Q9H239 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
MMP28Q9H239 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
MMP28Q9H239 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.69□□□□□ -0.22
MMP28Q9H239 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.69□□□□□ -0.22
MMP28Q9H239 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
MMP28Q9H239 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.69□□□□□ -0.22
MMP28Q9H239 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.69□□□□□ -0.22
MMP28Q9H239 HCG4B-203ENST00000450128 991 ntBASIC13.69□□□□□ -0.22
MMP28Q9H239 KRT18P3-201ENST00000451602 1288 ntBASIC13.69□□□□□ -0.22
MMP28Q9H239 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
MMP28Q9H239 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.69□□□□□ -0.22
MMP28Q9H239 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.69□□□□□ -0.22
MMP28Q9H239 ACTL9-202ENST00000612068 1252 ntBASIC13.69□□□□□ -0.22
MMP28Q9H239 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.69□□□□□ -0.22
MMP28Q9H239 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
MMP28Q9H239 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
MMP28Q9H239 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
MMP28Q9H239 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
MMP28Q9H239 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.69□□□□□ -0.22
MMP28Q9H239 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MMP28Q9H239 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
MMP28Q9H239 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms