Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 SPCS2P4-201ENST00000436160 681 ntBASIC15.02■□□□□ -0
CCDC28BQ9BUN5 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28BQ9BUN5 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 AC018442.1-201ENST00000421439 2061 ntBASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
CCDC28BQ9BUN5 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 AL662844.1-201ENST00000546340 181 ntBASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 AL645728.2-202ENST00000641679 227 ntBASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC28BQ9BUN5 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28BQ9BUN5 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms