Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.59■□□□□ 0.41
USP28Q96RU2 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
USP28Q96RU2 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.59■□□□□ 0.41
USP28Q96RU2 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.59■□□□□ 0.41
USP28Q96RU2 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.59■□□□□ 0.41
USP28Q96RU2 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
USP28Q96RU2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 AC009477.1-201ENST00000452936 217 ntBASIC17.59■□□□□ 0.41
USP28Q96RU2 AL589987.1-201ENST00000453380 819 ntBASIC17.59■□□□□ 0.41
USP28Q96RU2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
USP28Q96RU2 AC009407.1-201ENST00000568958 598 ntBASIC17.59■□□□□ 0.41
USP28Q96RU2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.59■□□□□ 0.41
USP28Q96RU2 AL391069.4-201ENST00000609583 481 ntBASIC17.59■□□□□ 0.41
USP28Q96RU2 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
USP28Q96RU2 AC079781.4-201ENST00000641908 219 ntBASIC17.59■□□□□ 0.41
USP28Q96RU2 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
USP28Q96RU2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 AC097359.2-201ENST00000604992 2389 ntBASIC17.59■□□□□ 0.41
USP28Q96RU2 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.59■□□□□ 0.41
USP28Q96RU2 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC17.59■□□□□ 0.41
USP28Q96RU2 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
USP28Q96RU2 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.59■□□□□ 0.41
USP28Q96RU2 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.59■□□□□ 0.41
USP28Q96RU2 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP28Q96RU2 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
USP28Q96RU2 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP28Q96RU2 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.58■□□□□ 0.41
USP28Q96RU2 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.58■□□□□ 0.41
USP28Q96RU2 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.58■□□□□ 0.41
USP28Q96RU2 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
USP28Q96RU2 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 AC067930.6-201ENST00000623257 4947 ntBASIC17.58■□□□□ 0.4
USP28Q96RU2 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.58■□□□□ 0.4
USP28Q96RU2 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
USP28Q96RU2 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.58■□□□□ 0.4
USP28Q96RU2 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.58■□□□□ 0.4
USP28Q96RU2 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.58■□□□□ 0.4
USP28Q96RU2 SAMD11P1-201ENST00000571429 661 ntBASIC17.58■□□□□ 0.4
USP28Q96RU2 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 AC023511.2-201ENST00000618803 211 ntBASIC17.58■□□□□ 0.4
USP28Q96RU2 AC018442.1-201ENST00000421439 2061 ntBASIC17.58■□□□□ 0.4
USP28Q96RU2 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 INTS4P1-203ENST00000641008 3683 ntBASIC17.58■□□□□ 0.4
USP28Q96RU2 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.58■□□□□ 0.4
USP28Q96RU2 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP28Q96RU2 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.58■□□□□ 0.4
USP28Q96RU2 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms