Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC42Q96M95 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC42Q96M95 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC42Q96M95 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 ELL2P1-201ENST00000413990 1906 ntBASIC16.66■□□□□ 0.26
CCDC42Q96M95 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 AC117489.1-201ENST00000625169 3217 ntBASIC16.66■□□□□ 0.26
CCDC42Q96M95 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 AL035456.1-201ENST00000456064 1369 ntBASIC16.66■□□□□ 0.26
CCDC42Q96M95 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 CEND1P1-201ENST00000451006 455 ntBASIC16.66■□□□□ 0.26
CCDC42Q96M95 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 ALG1L5P-201ENST00000482043 771 ntBASIC16.66■□□□□ 0.26
CCDC42Q96M95 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC42Q96M95 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CCDC42Q96M95 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 MTND6P24-201ENST00000440466 518 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 SLED1-202ENST00000512051 380 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 PGAM5P1-201ENST00000518923 814 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 AC015910.1-201ENST00000579400 975 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 AC007967.4-201ENST00000614700 386 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 AC012508.2-201ENST00000567613 1472 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms