Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 AC007541.1-201ENST00000570282 1469 ntBASIC17.05■□□□□ 0.32
HPS3Q969F9 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HPS3Q969F9 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.04■□□□□ 0.32
HPS3Q969F9 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 AC104457.1-201ENST00000401024 814 ntBASIC17.04■□□□□ 0.32
HPS3Q969F9 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.04■□□□□ 0.32
HPS3Q969F9 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.04■□□□□ 0.32
HPS3Q969F9 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.04■□□□□ 0.32
HPS3Q969F9 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.04■□□□□ 0.32
HPS3Q969F9 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.04■□□□□ 0.32
HPS3Q969F9 AC107373.2-201ENST00000607735 490 ntBASIC17.04■□□□□ 0.32
HPS3Q969F9 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.04■□□□□ 0.32
HPS3Q969F9 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HPS3Q969F9 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.04■□□□□ 0.32
HPS3Q969F9 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 FGD5P1-202ENST00000614866 2498 ntBASIC17.04■□□□□ 0.32
HPS3Q969F9 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HPS3Q969F9 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.04■□□□□ 0.32
HPS3Q969F9 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HPS3Q969F9 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.03■□□□□ 0.32
HPS3Q969F9 WASH3P-207ENST00000560956 1394 ntBASIC17.03■□□□□ 0.32
HPS3Q969F9 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HPS3Q969F9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.03■□□□□ 0.32
HPS3Q969F9 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
HPS3Q969F9 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.03■□□□□ 0.32
HPS3Q969F9 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.03■□□□□ 0.32
HPS3Q969F9 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.03■□□□□ 0.32
HPS3Q969F9 AC002472.2-201ENST00000442739 958 ntBASIC17.03■□□□□ 0.32
HPS3Q969F9 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.03■□□□□ 0.32
HPS3Q969F9 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.03■□□□□ 0.32
HPS3Q969F9 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.03■□□□□ 0.32
HPS3Q969F9 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.03■□□□□ 0.32
HPS3Q969F9 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HPS3Q969F9 AL132655.2-201ENST00000596276 594 ntBASIC17.03■□□□□ 0.32
HPS3Q969F9 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.03■□□□□ 0.32
HPS3Q969F9 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
HPS3Q969F9 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.03■□□□□ 0.32
HPS3Q969F9 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.03■□□□□ 0.32
HPS3Q969F9 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HPS3Q969F9 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.03■□□□□ 0.32
HPS3Q969F9 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HPS3Q969F9 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HPS3Q969F9 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.02■□□□□ 0.32
HPS3Q969F9 AL513477.1-201ENST00000602865 2407 ntBASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms