Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC099548.2-209ENST00000480264 625 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC011495.1-201ENST00000498085 584 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AL139099.5-201ENST00000635274 300 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 USE1-206ENST00000595101 1776 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CLK3P2-201ENST00000427566 1453 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PCGF3-213ENST00000620529 1899 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RPL13AP20-201ENST00000459725 609 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RARRES2P5-201ENST00000564013 466 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ATXN10-201ENST00000252934 3329 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 GOLGA6L22-203ENST00000620691 3991 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CYP4F24P-201ENST00000586049 1580 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 DKFZP434A062-201ENST00000573103 5021 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC108725.1-201ENST00000495472 409 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LINC01115-203ENST00000606068 577 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SUPT20HL2-201ENST00000486479 2409 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 EMB-201ENST00000303221 4281 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC087741.1-201ENST00000570309 4399 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms