Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 AL627422.1-201ENST00000434104 580 ntBASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 AC008805.1-201ENST00000590892 364 ntBASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 AL603764.1-201ENST00000636452 321 ntBASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMC1BQ8NDV3 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 AD000864.1-201ENST00000624076 2295 ntBASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 VDAC1P1-201ENST00000439229 848 ntBASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 AC022616.1-201ENST00000518688 554 ntBASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 MIR4472-1-201ENST00000584349 80 ntBASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 AC107464.3-201ENST00000609172 737 ntBASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 AC138466.5-201ENST00000624002 808 ntBASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMC1BQ8NDV3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 TMCO5B-205ENST00000530020 894 ntBASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 NUDT4P2-201ENST00000578341 546 ntBASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 AL358472.3-201ENST00000608147 415 ntBASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PP12613-201ENST00000424958 2230 ntBASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC18.04■□□□□ 0.48
SMC1BQ8NDV3 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms