Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 MIR770-201ENST00000390219 98 ntBASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 HMGB3P14-201ENST00000494195 599 ntBASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 DOC2GP-202ENST00000514950 1163 ntBASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 CLK3P2-201ENST00000427566 1453 ntBASIC14.57□□□□□ -0.08
CCDC116Q8IYX3 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 GNAQP1-201ENST00000444815 1067 ntBASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AC000095.1-201ENST00000603208 874 ntBASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AC004790.1-201ENST00000612686 536 ntBASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC116Q8IYX3 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms