Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AC134407.2-201ENST00000625089 1978 ntBASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AC093724.1-201ENST00000448659 1027 ntBASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AC092183.1-201ENST00000469884 875 ntBASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AC138969.2-201ENST00000532739 9932 ntBASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PPP4R4Q6NUP7 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 AC136759.1-202ENST00000530858 2194 ntBASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 MIR3909-201ENST00000579518 119 ntBASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.84□□□□□ -0.03
PPP4R4Q6NUP7 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms