Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 LINC00554-201ENST00000564841 3011 ntBASIC15.66■□□□□ 0.1
USP39Q53GS9 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 AC004945.1-201ENST00000416738 983 ntBASIC15.66■□□□□ 0.1
USP39Q53GS9 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 Z93015.1-201ENST00000451718 390 ntBASIC15.66■□□□□ 0.1
USP39Q53GS9 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.66■□□□□ 0.1
USP39Q53GS9 FAM86HP-204ENST00000513466 959 ntBASIC15.66■□□□□ 0.1
USP39Q53GS9 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.66■□□□□ 0.1
USP39Q53GS9 AC025279.2-201ENST00000569730 653 ntBASIC15.66■□□□□ 0.1
USP39Q53GS9 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.66■□□□□ 0.1
USP39Q53GS9 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.66■□□□□ 0.1
USP39Q53GS9 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
USP39Q53GS9 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
USP39Q53GS9 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
USP39Q53GS9 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.66■□□□□ 0.1
USP39Q53GS9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
USP39Q53GS9 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.65■□□□□ 0.1
USP39Q53GS9 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.65■□□□□ 0.1
USP39Q53GS9 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
USP39Q53GS9 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
USP39Q53GS9 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.65■□□□□ 0.1
USP39Q53GS9 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 AC092506.1-202ENST00000401022 528 ntBASIC15.65■□□□□ 0.1
USP39Q53GS9 BTBD6P1-201ENST00000412176 1267 ntBASIC15.65■□□□□ 0.1
USP39Q53GS9 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.65■□□□□ 0.1
USP39Q53GS9 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.65■□□□□ 0.1
USP39Q53GS9 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.65■□□□□ 0.1
USP39Q53GS9 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
USP39Q53GS9 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.65■□□□□ 0.1
USP39Q53GS9 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.65■□□□□ 0.1
USP39Q53GS9 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
USP39Q53GS9 AP005019.2-201ENST00000615104 511 ntBASIC15.65■□□□□ 0.1
USP39Q53GS9 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.65■□□□□ 0.1
USP39Q53GS9 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.65■□□□□ 0.1
USP39Q53GS9 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
USP39Q53GS9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.65■□□□□ 0.1
USP39Q53GS9 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.65■□□□□ 0.1
USP39Q53GS9 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 AL596257.1-201ENST00000641463 2694 ntBASIC15.65■□□□□ 0.1
USP39Q53GS9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
USP39Q53GS9 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
USP39Q53GS9 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms