Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CHD9Q3L8U1 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AL645933.1-201ENST00000440087 609 ntBASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AC092638.2-201ENST00000441105 947 ntBASIC15.81■□□□□ 0.12
CHD9Q3L8U1 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 PCDHA14-201ENST00000506751 2298 ntBASIC15.81■□□□□ 0.12
CHD9Q3L8U1 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AL451007.2-201ENST00000632004 563 ntBASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AL596087.1-201ENST00000400979 1969 ntBASIC15.81■□□□□ 0.12
CHD9Q3L8U1 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 MRPL37P1-201ENST00000592451 1337 ntBASIC15.81■□□□□ 0.12
CHD9Q3L8U1 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC15.81■□□□□ 0.12
CHD9Q3L8U1 AC008825.2-201ENST00000603374 718 ntBASIC15.81■□□□□ 0.12
CHD9Q3L8U1 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 AC025183.3-201ENST00000623526 1482 ntBASIC15.8■□□□□ 0.12
CHD9Q3L8U1 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 GCSHP3-201ENST00000431120 391 ntBASIC15.8■□□□□ 0.12
CHD9Q3L8U1 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 AC018695.6-201ENST00000614011 534 ntBASIC15.8■□□□□ 0.12
CHD9Q3L8U1 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 PRAL-201ENST00000624952 3286 ntBASIC15.8■□□□□ 0.12
CHD9Q3L8U1 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHD9Q3L8U1 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CHD9Q3L8U1 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CHD9Q3L8U1 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms