Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLRN1P58418 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLRN1P58418 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLRN1P58418 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLRN1P58418 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.81□□□□□ -0.2
CLRN1P58418 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.81□□□□□ -0.2
CLRN1P58418 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.81□□□□□ -0.2
CLRN1P58418 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLRN1P58418 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLRN1P58418 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CLRN1P58418 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLRN1P58418 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLRN1P58418 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLRN1P58418 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.81□□□□□ -0.2
CLRN1P58418 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLRN1P58418 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CLRN1P58418 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLRN1P58418 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 AC103702.1-201ENST00000548801 2630 ntBASIC13.8□□□□□ -0.2
CLRN1P58418 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.8□□□□□ -0.2
CLRN1P58418 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.8□□□□□ -0.2
CLRN1P58418 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.8□□□□□ -0.2
CLRN1P58418 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 FAM8A3P-201ENST00000427218 844 ntBASIC13.8□□□□□ -0.2
CLRN1P58418 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.8□□□□□ -0.2
CLRN1P58418 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.8□□□□□ -0.2
CLRN1P58418 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.8□□□□□ -0.2
CLRN1P58418 MEIS3P1-201ENST00000495167 958 ntBASIC13.8□□□□□ -0.2
CLRN1P58418 RFPL4AP1-201ENST00000530883 850 ntBASIC13.8□□□□□ -0.2
CLRN1P58418 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 AC025181.2-201ENST00000606994 802 ntBASIC13.8□□□□□ -0.2
CLRN1P58418 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.8□□□□□ -0.2
CLRN1P58418 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.8□□□□□ -0.2
CLRN1P58418 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CLRN1P58418 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
CLRN1P58418 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.8□□□□□ -0.2
CLRN1P58418 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CLRN1P58418 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLRN1P58418 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CLRN1P58418 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CLRN1P58418 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.79□□□□□ -0.2
CLRN1P58418 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CLRN1P58418 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.79□□□□□ -0.2
CLRN1P58418 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.79□□□□□ -0.2
CLRN1P58418 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.79□□□□□ -0.2
CLRN1P58418 AC004890.2-204ENST00000481968 304 ntBASIC13.79□□□□□ -0.2
CLRN1P58418 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
CLRN1P58418 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.79□□□□□ -0.2
CLRN1P58418 AC092337.1-201ENST00000568699 1129 ntBASIC13.79□□□□□ -0.2
CLRN1P58418 AC009407.1-201ENST00000568958 598 ntBASIC13.79□□□□□ -0.2
CLRN1P58418 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
CLRN1P58418 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.79□□□□□ -0.2
CLRN1P58418 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.79□□□□□ -0.2
CLRN1P58418 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CLRN1P58418 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms