Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.91□□□□□ -0.18
SUMO3P55854 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.91□□□□□ -0.18
SUMO3P55854 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 AC005252.2-201ENST00000624630 1141 ntBASIC13.91□□□□□ -0.18
SUMO3P55854 AC025048.6-201ENST00000634326 1161 ntBASIC13.91□□□□□ -0.18
SUMO3P55854 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
SUMO3P55854 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.91□□□□□ -0.18
SUMO3P55854 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 TCAF2P1-201ENST00000291129 2421 ntBASIC13.91□□□□□ -0.18
SUMO3P55854 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.91□□□□□ -0.18
SUMO3P55854 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
SUMO3P55854 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SUMO3P55854 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.9□□□□□ -0.18
SUMO3P55854 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.9□□□□□ -0.18
SUMO3P55854 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 KRT18P25-201ENST00000508931 1278 ntBASIC13.9□□□□□ -0.18
SUMO3P55854 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.9□□□□□ -0.18
SUMO3P55854 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.9□□□□□ -0.18
SUMO3P55854 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.9□□□□□ -0.18
SUMO3P55854 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
SUMO3P55854 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.9□□□□□ -0.18
SUMO3P55854 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.9□□□□□ -0.18
SUMO3P55854 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 PCDHA3-202ENST00000532566 4594 ntBASIC13.9□□□□□ -0.18
SUMO3P55854 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.9□□□□□ -0.18
SUMO3P55854 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SUMO3P55854 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.9□□□□□ -0.19
SUMO3P55854 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.19
SUMO3P55854 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.89□□□□□ -0.19
SUMO3P55854 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.89□□□□□ -0.19
SUMO3P55854 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SUMO3P55854 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.89□□□□□ -0.19
SUMO3P55854 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.89□□□□□ -0.19
SUMO3P55854 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.89□□□□□ -0.19
SUMO3P55854 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 HYMAI-201ENST00000635591 3347 ntBASIC13.89□□□□□ -0.19
SUMO3P55854 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SUMO3P55854 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.89□□□□□ -0.19
SUMO3P55854 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SUMO3P55854 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.89□□□□□ -0.19
SUMO3P55854 LILRP1-201ENST00000444199 1370 ntBASIC13.89□□□□□ -0.19
SUMO3P55854 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.89□□□□□ -0.19
SUMO3P55854 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 HLA-K-203ENST00000430151 1046 ntBASIC13.89□□□□□ -0.19
SUMO3P55854 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SUMO3P55854 AC022137.2-201ENST00000503482 481 ntBASIC13.89□□□□□ -0.19
SUMO3P55854 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
SUMO3P55854 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SUMO3P55854 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.89□□□□□ -0.19
SUMO3P55854 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms