Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PKNOX1P55347 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PKNOX1P55347 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
PKNOX1P55347 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.18■□□□□ 0.02
PKNOX1P55347 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.18■□□□□ 0.02
PKNOX1P55347 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.18■□□□□ 0.02
PKNOX1P55347 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.18■□□□□ 0.02
PKNOX1P55347 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.18■□□□□ 0.02
PKNOX1P55347 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.18■□□□□ 0.02
PKNOX1P55347 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.18■□□□□ 0.02
PKNOX1P55347 AC009093.7-201ENST00000623853 1223 ntBASIC15.18■□□□□ 0.02
PKNOX1P55347 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.18■□□□□ 0.02
PKNOX1P55347 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.18■□□□□ 0.02
PKNOX1P55347 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PKNOX1P55347 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 INTS4P1-203ENST00000641008 3683 ntBASIC15.18■□□□□ 0.02
PKNOX1P55347 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
PKNOX1P55347 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.18■□□□□ 0.02
PKNOX1P55347 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 AC041040.2-201ENST00000622926 2899 ntBASIC15.17■□□□□ 0.02
PKNOX1P55347 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.17■□□□□ 0.02
PKNOX1P55347 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 MTND6P24-201ENST00000440466 518 ntBASIC15.17■□□□□ 0.02
PKNOX1P55347 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.17■□□□□ 0.02
PKNOX1P55347 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.17■□□□□ 0.02
PKNOX1P55347 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.17■□□□□ 0.02
PKNOX1P55347 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.17■□□□□ 0.02
PKNOX1P55347 MIR3687-2-201ENST00000577708 61 ntBASIC15.17■□□□□ 0.02
PKNOX1P55347 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 MIR3687-1-201ENST00000614492 61 ntBASIC15.17■□□□□ 0.02
PKNOX1P55347 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PKNOX1P55347 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
PKNOX1P55347 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PKNOX1P55347 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PKNOX1P55347 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms