Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
FOXA1P55317 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.91□□□□□ -0.02
FOXA1P55317 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
FOXA1P55317 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.91□□□□□ -0.02
FOXA1P55317 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.91□□□□□ -0.02
FOXA1P55317 DNAJB3-202ENST00000449667 1266 ntBASIC14.91□□□□□ -0.02
FOXA1P55317 AC004967.1-201ENST00000453589 447 ntBASIC14.91□□□□□ -0.02
FOXA1P55317 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.91□□□□□ -0.02
FOXA1P55317 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.91□□□□□ -0.02
FOXA1P55317 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.91□□□□□ -0.02
FOXA1P55317 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
FOXA1P55317 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.91□□□□□ -0.02
FOXA1P55317 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
FOXA1P55317 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 AP001267.2-201ENST00000532619 2086 ntBASIC14.91□□□□□ -0.02
FOXA1P55317 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.91□□□□□ -0.02
FOXA1P55317 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
FOXA1P55317 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA1P55317 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA1P55317 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA1P55317 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 AC018442.1-201ENST00000421439 2061 ntBASIC14.9□□□□□ -0.02
FOXA1P55317 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.9□□□□□ -0.02
FOXA1P55317 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.9□□□□□ -0.02
FOXA1P55317 TSEN15P1-201ENST00000423257 515 ntBASIC14.9□□□□□ -0.02
FOXA1P55317 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.9□□□□□ -0.02
FOXA1P55317 AC044860.1-202ENST00000559481 777 ntBASIC14.9□□□□□ -0.02
FOXA1P55317 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA1P55317 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA1P55317 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.9□□□□□ -0.02
FOXA1P55317 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 AC073592.8-201ENST00000624126 511 ntBASIC14.9□□□□□ -0.02
FOXA1P55317 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 LINC01230-201ENST00000625222 3017 ntBASIC14.9□□□□□ -0.02
FOXA1P55317 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.9□□□□□ -0.02
FOXA1P55317 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
FOXA1P55317 TUBB3P1-201ENST00000405796 1332 ntBASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms