Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.18■□□□□ 0.02
LIMK1P53667 RN7SL774P-201ENST00000577467 290 ntBASIC15.18■□□□□ 0.02
LIMK1P53667 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.18■□□□□ 0.02
LIMK1P53667 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
LIMK1P53667 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.18■□□□□ 0.02
LIMK1P53667 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
LIMK1P53667 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
LIMK1P53667 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LIMK1P53667 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LIMK1P53667 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.17■□□□□ 0.02
LIMK1P53667 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.17■□□□□ 0.02
LIMK1P53667 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
LIMK1P53667 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.17■□□□□ 0.02
LIMK1P53667 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
LIMK1P53667 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.17■□□□□ 0.02
LIMK1P53667 RN7SL574P-201ENST00000581512 297 ntBASIC15.17■□□□□ 0.02
LIMK1P53667 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LIMK1P53667 AC091544.8-201ENST00000619490 361 ntBASIC15.17■□□□□ 0.02
LIMK1P53667 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.17■□□□□ 0.02
LIMK1P53667 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LIMK1P53667 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.17■□□□□ 0.02
LIMK1P53667 FAM45BP-202ENST00000592932 1624 ntBASIC15.17■□□□□ 0.02
LIMK1P53667 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC15.17■□□□□ 0.02
LIMK1P53667 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LIMK1P53667 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LIMK1P53667 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
LIMK1P53667 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 ACTBP8-201ENST00000403258 1108 ntBASIC15.16■□□□□ 0.02
LIMK1P53667 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.16■□□□□ 0.02
LIMK1P53667 AC024681.1-201ENST00000521917 487 ntBASIC15.16■□□□□ 0.02
LIMK1P53667 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 PGAM1P5-201ENST00000548011 764 ntBASIC15.16■□□□□ 0.02
LIMK1P53667 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 RN7SL555P-201ENST00000584742 339 ntBASIC15.16■□□□□ 0.02
LIMK1P53667 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.16■□□□□ 0.02
LIMK1P53667 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms