Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 AC006449.5-201ENST00000610658 2098 ntBASIC17.66■□□□□ 0.42
SCN4AP35499 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.65■□□□□ 0.42
SCN4AP35499 GUSBP10-201ENST00000417412 665 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC17.65■□□□□ 0.42
SCN4AP35499 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC17.65■□□□□ 0.42
SCN4AP35499 THY1-209ENST00000580275 578 ntTSL 3 BASIC17.65■□□□□ 0.42
SCN4AP35499 AC055811.3-201ENST00000584952 686 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 AIRN-201ENST00000601203 4374 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.65■□□□□ 0.42
SCN4AP35499 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 AL360270.3-201ENST00000609118 1348 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SCN4AP35499 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
SCN4AP35499 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SCN4AP35499 AL137783.1-201ENST00000623494 1896 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 ZBED1P1-201ENST00000502364 1930 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 AC099398.1-201ENST00000567919 2776 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 RN7SKP109-201ENST00000410592 316 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC17.65■□□□□ 0.42
SCN4AP35499 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.65■□□□□ 0.42
SCN4AP35499 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
SCN4AP35499 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC17.65■□□□□ 0.42
SCN4AP35499 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC17.65■□□□□ 0.42
SCN4AP35499 HMGB1P24-201ENST00000611897 328 ntBASIC17.65■□□□□ 0.42
SCN4AP35499 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SCN4AP35499 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC17.65■□□□□ 0.42
SCN4AP35499 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.65■□□□□ 0.42
SCN4AP35499 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC17.65■□□□□ 0.42
SCN4AP35499 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SCN4AP35499 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SCN4AP35499 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SCN4AP35499 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.64■□□□□ 0.41
SCN4AP35499 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SCN4AP35499 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SCN4AP35499 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SCN4AP35499 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.64■□□□□ 0.41
SCN4AP35499 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC17.64■□□□□ 0.41
SCN4AP35499 RHEB-207ENST00000496004 744 ntTSL 2 BASIC17.64■□□□□ 0.41
SCN4AP35499 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 PEBP1P2-201ENST00000603980 558 ntBASIC17.64■□□□□ 0.41
SCN4AP35499 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.64■□□□□ 0.41
SCN4AP35499 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SCN4AP35499 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC17.64■□□□□ 0.41
SCN4AP35499 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.64■□□□□ 0.41
SCN4AP35499 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.64■□□□□ 0.41
SCN4AP35499 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.64■□□□□ 0.41
SCN4AP35499 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
SCN4AP35499 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SCN4AP35499 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.64■□□□□ 0.41
SCN4AP35499 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SCN4AP35499 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC17.63■□□□□ 0.41
SCN4AP35499 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 TNRC18P3-201ENST00000441896 2691 ntBASIC17.63■□□□□ 0.41
SCN4AP35499 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SCN4AP35499 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.63■□□□□ 0.41
SCN4AP35499 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SCN4AP35499 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms