Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 XRCC5-203ENST00000417391 605 ntTSL 313.27□□□□□ -0.295e-13■□□□□ 9.9
YBX3P16989 XRCC5-208ENST00000476360 610 ntTSL 212.47□□□□□ -0.415e-13■□□□□ 9.9
YBX3P16989 SEC11A-204ENST00000558196 540 ntTSL 310.77□□□□□ -0.695e-13■□□□□ 9.9
YBX3P16989 MTA1-214ENST00000494026 852 ntTSL 523.94■■□□□ 1.422e-8■□□□□ 9.9
YBX3P16989 MTA1-210ENST00000481012 987 ntTSL 523.23■■□□□ 1.312e-8■□□□□ 9.9
YBX3P16989 MTA1-216ENST00000498644 871 ntTSL 222.49■■□□□ 1.192e-8■□□□□ 9.9
YBX3P16989 MTA1-204ENST00000424723 904 ntTSL 1 (best)20.95■□□□□ 0.942e-8■□□□□ 9.9
YBX3P16989 MTA1-219ENST00000551236 461 ntTSL 315.79■□□□□ 0.122e-8■□□□□ 9.9
YBX3P16989 NDUFA2-202ENST00000502960 721 ntTSL 226.32■■□□□ 1.82e-10■□□□□ 9.9
YBX3P16989 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.972e-10■□□□□ 9.9
YBX3P16989 NDUFA2-204ENST00000512088 627 ntTSL 2 BASIC14.95□□□□□ -0.022e-10■□□□□ 9.9
YBX3P16989 MGAT4B-218ENST00000521855 593 ntTSL 219.41■□□□□ 0.71e-8■□□□□ 9.9
YBX3P16989 MGAT4B-213ENST00000520822 745 ntTSL 219.31■□□□□ 0.681e-8■□□□□ 9.9
YBX3P16989 MGAT4B-204ENST00000518702 542 ntTSL 310.72□□□□□ -0.691e-8■□□□□ 9.9
YBX3P16989 CHP1-201ENST00000334660 3329 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.512e-8■□□□□ 9.9
YBX3P16989 BNIP3-203ENST00000631806 752 ntTSL 219.57■□□□□ 0.722e-13■□□□□ 9.9
YBX3P16989 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.017e-8■□□□□ 9.9
YBX3P16989 BMP4-204ENST00000558961 495 ntTSL 314.86□□□□□ -0.035e-6■□□□□ 9.9
YBX3P16989 SORL1-202ENST00000524633 1338 ntTSL 511.78□□□□□ -0.521e-6■□□□□ 9.9
YBX3P16989 LBR-206ENST00000441022 536 ntTSL 26.9□□□□□ -1.32e-10■□□□□ 9.9
YBX3P16989 C6orf106-201ENST00000374021 916 ntAPPRIS ALT2 TSL 3 BASIC9.6□□□□□ -0.874e-7■□□□□ 9.9
YBX3P16989 SF3A1-205ENST00000463818 583 ntTSL 225.44■■□□□ 1.661e-6■□□□□ 9.9
YBX3P16989 CCT5-202ENST00000423695 1232 ntTSL 212.64□□□□□ -0.399e-10■□□□□ 9.9
YBX3P16989 BZW2-203ENST00000407633 898 ntTSL 3 BASIC12.44□□□□□ -0.422e-11■□□□□ 9.9
YBX3P16989 STXBP2-220ENST00000601061 706 ntTSL 326.81■■□□□ 1.883e-14■□□□□ 9.9
YBX3P16989 STXBP2-205ENST00000593854 704 ntTSL 224.6■■□□□ 1.533e-14■□□□□ 9.9
YBX3P16989 STXBP2-208ENST00000595800 1974 ntTSL 223.23■■□□□ 1.313e-14■□□□□ 9.9
YBX3P16989 STXBP2-214ENST00000599400 811 ntTSL 520.23■□□□□ 0.833e-14■□□□□ 9.9
YBX3P16989 STXBP2-219ENST00000600702 770 ntTSL 218.32■□□□□ 0.523e-14■□□□□ 9.9
YBX3P16989 EMD-208ENST00000492448 832 ntTSL 220.26■□□□□ 0.833e-11■□□□□ 9.9
YBX3P16989 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC32.54■■■□□ 2.82e-6■□□□□ 9.9
YBX3P16989 FAM189B-207ENST00000487649 1499 ntTSL 1 (best)22.21■■□□□ 1.152e-6■□□□□ 9.9
YBX3P16989 FAM189B-205ENST00000472550 948 ntTSL 521.86■■□□□ 1.092e-6■□□□□ 9.9
YBX3P16989 FAM189B-208ENST00000491082 1006 ntTSL 517.39■□□□□ 0.372e-6■□□□□ 9.9
YBX3P16989 EIF2B5-203ENST00000432982 597 ntTSL 522.99■■□□□ 1.271e-7■□□□□ 9.9
YBX3P16989 SDHB-203ENST00000466613 828 ntTSL 222.19■■□□□ 1.142e-21■□□□□ 9.9
YBX3P16989 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.621e-7■□□□□ 9.9
YBX3P16989 YPEL3-212ENST00000570099 669 ntTSL 318.8■□□□□ 0.61e-7■□□□□ 9.9
YBX3P16989 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.463e-11■□□□□ 9.9
YBX3P16989 PPP1R12A-208ENST00000547330 2275 ntTSL 1 (best)17.27■□□□□ 0.361e-7■□□□□ 9.9
YBX3P16989 EIF2B5-212ENST00000491144 3038 ntTSL 217.25■□□□□ 0.351e-7■□□□□ 9.9
YBX3P16989 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.31e-7■□□□□ 9.9
YBX3P16989 CCNH-203ENST00000504878 1497 ntTSL 1 (best) BASIC15.73■□□□□ 0.113e-11■□□□□ 9.9
YBX3P16989 CYP2F2P-201ENST00000437853 1056 ntBASIC15.57■□□□□ 0.081e-7■□□□□ 9.9
YBX3P16989 EIF2B5-215ENST00000493740 564 ntTSL 414.85□□□□□ -0.031e-7■□□□□ 9.9
YBX3P16989 EIF2B5-209ENST00000481054 3460 ntTSL 1 (best)14.58□□□□□ -0.081e-7■□□□□ 9.9
YBX3P16989 CYP2F2P-202ENST00000641827 1004 ntBASIC14.27□□□□□ -0.131e-7■□□□□ 9.9
YBX3P16989 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.291e-7■□□□□ 9.9
YBX3P16989 PPP1R12A-203ENST00000450142 5721 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.551e-7■□□□□ 9.9
YBX3P16989 PPP1R12A-202ENST00000437004 4639 ntTSL 1 (best) BASIC11.64□□□□□ -0.551e-7■□□□□ 9.9
YBX3P16989 CCNH-210ENST00000513499 606 ntTSL 311.52□□□□□ -0.573e-11■□□□□ 9.9
YBX3P16989 SCAF11-205ENST00000465950 5296 ntTSL 1 (best) BASIC9.92□□□□□ -0.821e-7■□□□□ 9.9
YBX3P16989 PPP1R12A-213ENST00000550107 2925 ntTSL 1 (best) BASIC9.64□□□□□ -0.871e-7■□□□□ 9.9
YBX3P16989 EIF2B5-205ENST00000468748 673 ntTSL 48.73□□□□□ -1.011e-7■□□□□ 9.9
YBX3P16989 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC8.09□□□□□ -1.111e-7■□□□□ 9.9
YBX3P16989 CCNH-202ENST00000504115 778 ntTSL 27.82□□□□□ -1.163e-11■□□□□ 9.9
YBX3P16989 TTK-210ENST00000515751 584 ntTSL 47.82□□□□□ -1.161e-7■□□□□ 9.9
YBX3P16989 PPP1R12A-206ENST00000547131 897 ntTSL 57.7□□□□□ -1.181e-7■□□□□ 9.9
YBX3P16989 YBX3-205ENST00000536107 438 ntTSL 27.23□□□□□ -1.251e-6■□□□□ 9.9
YBX3P16989 CCNH-208ENST00000510921 549 ntTSL 46.4□□□□□ -1.383e-11■□□□□ 9.9
YBX3P16989 CCNH-205ENST00000505587 1940 ntTSL 26.31□□□□□ -1.43e-11■□□□□ 9.9
YBX3P16989 TOP2B-202ENST00000413971 2049 ntTSL 55.97□□□□□ -1.451e-7■□□□□ 9.9
YBX3P16989 EIF2B5-208ENST00000479833 476 ntTSL 55.71□□□□□ -1.51e-7■□□□□ 9.9
YBX3P16989 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.25□□□□□ -1.571e-7■□□□□ 9.9
YBX3P16989 PPP1R12A-221ENST00000553081 1101 ntTSL 55.2□□□□□ -1.581e-7■□□□□ 9.9
YBX3P16989 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.73□□□□□ -1.653e-11■□□□□ 9.9
YBX3P16989 EFTUD2-205ENST00000586276 3678 ntTSL 28.53□□□□□ -1.042e-7■□□□□ 9.9
YBX3P16989 ACTB-210ENST00000477812 820 ntTSL 224.86■■□□□ 1.572e-79■□□□□ 9.9
YBX3P16989 SMIM20-204ENST00000522137 427 ntTSL 27.17□□□□□ -1.268e-10■□□□□ 9.9
YBX3P16989 CEP57-208ENST00000538095 590 ntTSL 420.59■□□□□ 0.892e-6■□□□□ 9.9
YBX3P16989 CEP57-214ENST00000541365 870 ntTSL 320.48■□□□□ 0.872e-6■□□□□ 9.9
YBX3P16989 CEP57-216ENST00000544522 851 ntTSL 219.7■□□□□ 0.742e-6■□□□□ 9.9
YBX3P16989 CEP57-204ENST00000535497 446 ntTSL 319.15■□□□□ 0.662e-6■□□□□ 9.9
YBX3P16989 CEP57-210ENST00000538658 2084 ntTSL 1 (best) BASIC15.24■□□□□ 0.032e-6■□□□□ 9.9
YBX3P16989 CEP57-205ENST00000536587 447 ntTSL 56.49□□□□□ -1.372e-6■□□□□ 9.9
YBX3P16989 CEP57-215ENST00000541768 503 ntTSL 26.45□□□□□ -1.382e-6■□□□□ 9.9
YBX3P16989 PI4KB-211ENST00000489223 558 ntTSL 419.9■□□□□ 0.781e-6■□□□□ 9.9
YBX3P16989 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.021e-6■□□□□ 9.9
YBX3P16989 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.376e-9■□□□□ 9.9
YBX3P16989 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.841e-7■□□□□ 9.9
YBX3P16989 MRPS25-204ENST00000447299 723 ntTSL 322.53■■□□□ 1.24e-8■□□□□ 9.9
YBX3P16989 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC19.64■□□□□ 0.734e-8■□□□□ 9.9
YBX3P16989 MRPS25-202ENST00000420267 590 ntTSL 417.47■□□□□ 0.394e-8■□□□□ 9.9
YBX3P16989 MRPS25-201ENST00000253686 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.454e-8■□□□□ 9.9
YBX3P16989 MRPS25-205ENST00000449354 1119 ntTSL 2 BASIC10.63□□□□□ -0.714e-8■□□□□ 9.9
YBX3P16989 NAT10-208ENST00000532555 615 ntTSL 27.81□□□□□ -1.164e-7■□□□□ 9.9
YBX3P16989 SLC35F5-212ENST00000498768 1711 ntTSL 1 (best)26.87■■□□□ 1.896e-7■□□□□ 9.9
YBX3P16989 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.89■■□□□ 1.096e-7■□□□□ 9.9
YBX3P16989 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.586e-7■□□□□ 9.9
YBX3P16989 SLC35F5-202ENST00000409106 3120 ntTSL 217.98■□□□□ 0.476e-7■□□□□ 9.9
YBX3P16989 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC8.37□□□□□ -1.076e-7■□□□□ 9.9
YBX3P16989 SLC35F5-207ENST00000460863 466 ntTSL 37.11□□□□□ -1.276e-7■□□□□ 9.9
YBX3P16989 APRT-211ENST00000569616 788 ntTSL 522.25■■□□□ 1.151e-9■□□□□ 9.9
YBX3P16989 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.34■□□□□ 0.851e-9■□□□□ 9.9
YBX3P16989 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.691e-9■□□□□ 9.9
YBX3P16989 APRT-207ENST00000567391 667 ntTSL 319.38■□□□□ 0.691e-9■□□□□ 9.9
YBX3P16989 APRT-209ENST00000568319 542 ntTSL 317.14■□□□□ 0.331e-9■□□□□ 9.9
YBX3P16989 APRT-202ENST00000426324 664 ntTSL 2 BASIC16.5■□□□□ 0.231e-9■□□□□ 9.9
YBX3P16989 APRT-208ENST00000567713 470 ntTSL 515.1■□□□□ 0.011e-9■□□□□ 9.9
YBX3P16989 EIF4A1-216ENST00000580888 710 ntTSL 222.87■■□□□ 1.255e-10■□□□□ 9.9
Retrieved 100 of 29,075 protein–RNA pairs in 189.5 ms