RNA–Protein interactions for RNA: ENST00000465950.5

SCAF11-205, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 5,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-205ENST00000465950 DCAF8L2P0C7V8 631 aa17.21■□□□□ 0.35
SCAF11-205ENST00000465950 NISCHQ9Y2I1 1504 aa16.89■□□□□ 0.3
SCAF11-205ENST00000465950 FAM9AQ8IZU1 332 aaPredicted RBP16.34■□□□□ 0.21
SCAF11-205ENST00000465950 APLP2Q06481 763 aa15.23■□□□□ 0.03
SCAF11-205ENST00000465950 SUPT5HO00267 1087 aaKnown RBP15.14■□□□□ 0.01
SCAF11-205ENST00000465950 ABCC9O60706 1549 aa15.1■□□□□ 0.01
SCAF11-205ENST00000465950 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
SCAF11-205ENST00000465950 MYT1LQ9UL68 1186 aa14.77□□□□□ -0.04
SCAF11-205ENST00000465950 PABPN1Q86U42 306 aaKnown RBP eCLIP14.68□□□□□ -0.06
SCAF11-205ENST00000465950 ATP1B4Q9UN42 357 aaPredicted RBP14.65□□□□□ -0.06
SCAF11-205ENST00000465950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.59□□□□□ -0.07
SCAF11-205ENST00000465950 HNRNPUL2Q1KMD3 747 aaKnown RBP14.59□□□□□ -0.07
SCAF11-205ENST00000465950 NPM1P06748 294 aaKnown RBP eCLIP14.56□□□□□ -0.08
SCAF11-205ENST00000465950 TRIM41Q8WV44 630 aa14.46□□□□□ -0.09
SCAF11-205ENST00000465950 RB1CC1Q8TDY2 1594 aa14.45□□□□□ -0.1
SCAF11-205ENST00000465950 UBTFP17480 764 aaKnown RBP14.42□□□□□ -0.1
SCAF11-205ENST00000465950 FBLN2P98095 1184 aa14.4□□□□□ -0.1
SCAF11-205ENST00000465950 ESF1Q9H501 851 aaKnown RBP14.37□□□□□ -0.11
SCAF11-205ENST00000465950 CCDC180Q9P1Z9 1646 aa14.33□□□□□ -0.12
SCAF11-205ENST00000465950 TTBK1Q5TCY1 1321 aaPredicted RBP14.3□□□□□ -0.12
SCAF11-205ENST00000465950 RANGAP1P46060 587 aaPredicted RBP14.27□□□□□ -0.13
SCAF11-205ENST00000465950 EHMT2Q96KQ7 1210 aa14.26□□□□□ -0.13
SCAF11-205ENST00000465950 NACADO15069 1562 aa14.18□□□□□ -0.14
SCAF11-205ENST00000465950 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
SCAF11-205ENST00000465950 CDK11AQ9UQ88 783 aaPredicted RBP14.15□□□□□ -0.14
SCAF11-205ENST00000465950 SCRIBQ14160 1630 aa14.06□□□□□ -0.16
SCAF11-205ENST00000465950 CHMP7Q8WUX9 453 aaPredicted RBP14.01□□□□□ -0.17
SCAF11-205ENST00000465950 BCANQ96GW7 911 aa13.95□□□□□ -0.18
SCAF11-205ENST00000465950 TRHP20396 242 aaPredicted RBP13.94□□□□□ -0.18
SCAF11-205ENST00000465950 AEBP2Q6ZN18 517 aaPredicted RBP13.92□□□□□ -0.18
SCAF11-205ENST00000465950 CHIC1Q5VXU3 224 aa13.9□□□□□ -0.18
SCAF11-205ENST00000465950 PELP1Q8IZL8 1130 aaKnown RBP13.9□□□□□ -0.18
SCAF11-205ENST00000465950 STAG3Q9UJ98 1225 aa13.84□□□□□ -0.19
SCAF11-205ENST00000465950 PDS5BQ9NTI5 1447 aa13.77□□□□□ -0.21
SCAF11-205ENST00000465950 BAZ1BQ9UIG0 1483 aaKnown RBP13.71□□□□□ -0.21
SCAF11-205ENST00000465950 SLC4A1APQ9BWU0 796 aaKnown RBP13.7□□□□□ -0.22
SCAF11-205ENST00000465950 ARID4BQ4LE39 1312 aaPredicted RBP13.69□□□□□ -0.22
SCAF11-205ENST00000465950 ZCCHC6Q5VYS8 1495 aaKnown RBP13.66□□□□□ -0.22
SCAF11-205ENST00000465950 ACIN1Q9UKV3 1341 aaKnown RBP13.63□□□□□ -0.23
SCAF11-205ENST00000465950 CECR2Q9BXF3 1484 aa13.61□□□□□ -0.23
SCAF11-205ENST00000465950 NEFMP07197 916 aa13.59□□□□□ -0.23
SCAF11-205ENST00000465950 PLPPR3Q6T4P5 718 aa13.57□□□□□ -0.24
SCAF11-205ENST00000465950 TRIM52Q96A61 297 aa13.57□□□□□ -0.24
SCAF11-205ENST00000465950 HDGFP51858 240 aaKnown RBP13.55□□□□□ -0.24
SCAF11-205ENST00000465950 PLEKHD1A6NEE1 506 aa13.55□□□□□ -0.24
SCAF11-205ENST00000465950 FOXD1Q16676 465 aa13.54□□□□□ -0.24
SCAF11-205ENST00000465950 OSCARQ8IYS5 282 aa13.53□□□□□ -0.24
SCAF11-205ENST00000465950 ZEB1P37275 1124 aaPredicted RBP13.53□□□□□ -0.24
SCAF11-205ENST00000465950 TSPY4P0CV99 314 aa13.52□□□□□ -0.24
SCAF11-205ENST00000465950 TSPY10P0CW01 314 aa13.52□□□□□ -0.24
SCAF11-205ENST00000465950 FAM50AQ14320 339 aaKnown RBP13.52□□□□□ -0.24
SCAF11-205ENST00000465950 SMARCA2P51531 1590 aa13.52□□□□□ -0.25
SCAF11-205ENST00000465950 ZNF777Q9ULD5 760 aaPredicted RBP13.52□□□□□ -0.25
SCAF11-205ENST00000465950 DCAF1Q9Y4B6 1507 aa13.5□□□□□ -0.25
SCAF11-205ENST00000465950 ITGAEP38570 1179 aa13.5□□□□□ -0.25
SCAF11-205ENST00000465950 C14orf37Q86TY3 774 aa13.49□□□□□ -0.25
SCAF11-205ENST00000465950 MYO15BQ96JP2 1530 aa13.47□□□□□ -0.25
SCAF11-205ENST00000465950 PPP1R15AO75807 674 aaPredicted RBP13.47□□□□□ -0.25
SCAF11-205ENST00000465950 CCER1Q8TC90 406 aaPredicted RBP13.44□□□□□ -0.26
SCAF11-205ENST00000465950 HAP1P54257 671 aaPredicted RBP13.44□□□□□ -0.26
SCAF11-205ENST00000465950 BAZ1AQ9NRL2 1556 aaPredicted RBP13.44□□□□□ -0.26
SCAF11-205ENST00000465950 CARMIL2Q6F5E8 1435 aa13.43□□□□□ -0.26
SCAF11-205ENST00000465950 CSRNP3Q8WYN3 585 aa13.42□□□□□ -0.26
SCAF11-205ENST00000465950 CHGAP10645 457 aaKnown RBP13.41□□□□□ -0.26
SCAF11-205ENST00000465950 POLR3GLQ9BT43 218 aa13.39□□□□□ -0.27
SCAF11-205ENST00000465950 NPM2Q86SE8 214 aaKnown RBP13.39□□□□□ -0.27
SCAF11-205ENST00000465950 KCNH8Q96L42 1107 aa13.37□□□□□ -0.27
SCAF11-205ENST00000465950 ABCC8Q09428 1581 aa13.36□□□□□ -0.27
SCAF11-205ENST00000465950 PCGF6Q9BYE7 350 aa13.35□□□□□ -0.27
SCAF11-205ENST00000465950 RSF1Q96T23 1441 aaPredicted RBP13.34□□□□□ -0.27
SCAF11-205ENST00000465950 P3H3Q8IVL6 736 aa13.34□□□□□ -0.27
SCAF11-205ENST00000465950 DCAF8L1A6NGE4 600 aa13.33□□□□□ -0.28
SCAF11-205ENST00000465950 ARID3CA6NKF2 412 aa13.32□□□□□ -0.28
SCAF11-205ENST00000465950 KIF27Q86VH2 1401 aa13.31□□□□□ -0.28
SCAF11-205ENST00000465950 SCAF1Q9H7N4 1312 aaKnown RBP13.29□□□□□ -0.28
SCAF11-205ENST00000465950 WRNQ14191 1432 aaPredicted RBP eCLIP13.29□□□□□ -0.28
SCAF11-205ENST00000465950 ZBTB47Q9UFB7 747 aaPredicted RBP13.25□□□□□ -0.29
SCAF11-205ENST00000465950 CEP164Q9UPV0 1460 aa13.24□□□□□ -0.29
SCAF11-205ENST00000465950 EEA1Q15075 1411 aa13.24□□□□□ -0.29
SCAF11-205ENST00000465950 SLC24A1O60721 1099 aa13.24□□□□□ -0.29
SCAF11-205ENST00000465950 CLIP1P30622 1438 aa13.23□□□□□ -0.29
SCAF11-205ENST00000465950 KANK1Q14678 1352 aa13.23□□□□□ -0.29
SCAF11-205ENST00000465950 MTUS2Q5JR59 1369 aa13.23□□□□□ -0.29
SCAF11-205ENST00000465950 CADPSQ9ULU8 1353 aa13.22□□□□□ -0.29
SCAF11-205ENST00000465950 ZNF326Q5BKZ1 582 aaKnown RBP13.21□□□□□ -0.29
SCAF11-205ENST00000465950 NEFLP07196 543 aa13.2□□□□□ -0.3
SCAF11-205ENST00000465950 CYB5RLQ6IPT4 315 aa13.16□□□□□ -0.3
SCAF11-205ENST00000465950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.14□□□□□ -0.312e-9■■■■■ 30.3
SCAF11-205ENST00000465950 EID1Q9Y6B2 187 aa13.12□□□□□ -0.31
SCAF11-205ENST00000465950 EFCAB2Q5VUJ9 269 aa13.12□□□□□ -0.31
SCAF11-205ENST00000465950 SOGA1O94964 1423 aa13.12□□□□□ -0.31
SCAF11-205ENST00000465950 A0A0G2JS52 829 aa13.12□□□□□ -0.31
SCAF11-205ENST00000465950 MYT1Q01538 1121 aa13.12□□□□□ -0.31
SCAF11-205ENST00000465950 CFDP1Q9UEE9 299 aaPredicted RBP13.11□□□□□ -0.31
SCAF11-205ENST00000465950 EIF4G2P78344 907 aaKnown RBP eCLIP13.04□□□□□ -0.32
SCAF11-205ENST00000465950 HMGB2P26583 209 aaKnown RBP13.04□□□□□ -0.32
SCAF11-205ENST00000465950 GOLGA3Q08378 1498 aa13.03□□□□□ -0.32
SCAF11-205ENST00000465950 MLECQ14165 292 aa13.03□□□□□ -0.32
SCAF11-205ENST00000465950 RSPH4AQ5TD94 716 aa13.02□□□□□ -0.33
SCAF11-205ENST00000465950 CDCA8Q53HL2 280 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms