Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
COL6A3P12111 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.52■□□□□ 0.07
COL6A3P12111 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.07
COL6A3P12111 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.52■□□□□ 0.07
COL6A3P12111 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 FTX-216ENST00000638985 1367 ntTSL 5 BASIC15.52■□□□□ 0.07
COL6A3P12111 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL6A3P12111 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC15.52■□□□□ 0.07
COL6A3P12111 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL6A3P12111 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL6A3P12111 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.51■□□□□ 0.07
COL6A3P12111 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC15.51■□□□□ 0.07
COL6A3P12111 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 HLA-DMA-202ENST00000395303 1007 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 CDK4P1-201ENST00000454213 828 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 RNASEH2CP1-201ENST00000454281 502 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.51■□□□□ 0.07
COL6A3P12111 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 TRMT112P3-201ENST00000580149 358 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC15.51■□□□□ 0.07
COL6A3P12111 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC15.51■□□□□ 0.07
COL6A3P12111 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
COL6A3P12111 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 AC006058.4-201ENST00000624016 1670 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 HYMAI-201ENST00000635591 3347 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 MBP-201ENST00000354542 575 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
COL6A3P12111 STK24P1-201ENST00000455035 1291 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC15.51■□□□□ 0.07
COL6A3P12111 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC15.51■□□□□ 0.07
COL6A3P12111 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 APOC1-209ENST00000592885 562 ntTSL 3 BASIC15.51■□□□□ 0.07
COL6A3P12111 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 AC087072.1-201ENST00000603727 421 ntBASIC15.51■□□□□ 0.07
COL6A3P12111 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.51■□□□□ 0.07
COL6A3P12111 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL6A3P12111 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL6A3P12111 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.5■□□□□ 0.07
COL6A3P12111 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 AL357143.1-203ENST00000639750 881 ntBASIC15.5■□□□□ 0.07
COL6A3P12111 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC15.5■□□□□ 0.07
COL6A3P12111 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
COL6A3P12111 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.5■□□□□ 0.07
COL6A3P12111 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.5■□□□□ 0.07
COL6A3P12111 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 DNM1P48-201ENST00000419538 439 ntBASIC15.5■□□□□ 0.07
COL6A3P12111 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.5■□□□□ 0.07
COL6A3P12111 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.5■□□□□ 0.07
COL6A3P12111 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL6A3P12111 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 HMGA1P2-201ENST00000430198 324 ntBASIC15.5■□□□□ 0.07
COL6A3P12111 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.5■□□□□ 0.07
COL6A3P12111 AP002490.2-201ENST00000524791 560 ntBASIC15.5■□□□□ 0.07
COL6A3P12111 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC15.5■□□□□ 0.07
COL6A3P12111 RN7SL357P-201ENST00000581065 298 ntBASIC15.5■□□□□ 0.07
COL6A3P12111 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC15.5■□□□□ 0.07
COL6A3P12111 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC15.5■□□□□ 0.07
COL6A3P12111 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL6A3P12111 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms