Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 DFFBP1-201ENST00000433250 979 ntBASIC17.76■□□□□ 0.43
CTDNEP1O95476 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 AL359711.2-201ENST00000563105 872 ntBASIC17.76■□□□□ 0.43
CTDNEP1O95476 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 AL132655.2-201ENST00000596276 594 ntBASIC17.76■□□□□ 0.43
CTDNEP1O95476 LINC02560-201ENST00000596379 459 ntBASIC17.76■□□□□ 0.43
CTDNEP1O95476 AL096865.1-201ENST00000606796 927 ntBASIC17.76■□□□□ 0.43
CTDNEP1O95476 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 PRSS30P-206ENST00000641773 873 ntBASIC17.76■□□□□ 0.43
CTDNEP1O95476 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 AC007541.1-201ENST00000570282 1469 ntBASIC17.75■□□□□ 0.43
CTDNEP1O95476 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 AC123567.1-201ENST00000548294 1261 ntBASIC17.75■□□□□ 0.43
CTDNEP1O95476 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 AC093726.1-201ENST00000608064 963 ntBASIC17.75■□□□□ 0.43
CTDNEP1O95476 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CTDNEP1O95476 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTDNEP1O95476 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 KRT8P22-201ENST00000562317 1415 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AC023090.2-201ENST00000625182 2110 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AC236430.1-201ENST00000402231 743 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 AC002472.2-201ENST00000442739 958 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AC093813.1-201ENST00000605066 256 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 AC008761.3-201ENST00000624803 892 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AL136379.1-201ENST00000623471 2642 ntBASIC17.74■□□□□ 0.43
CTDNEP1O95476 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CTDNEP1O95476 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CTDNEP1O95476 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms