Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 AC211486.1-202ENST00000416371 468 ntBASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 AC254562.1-201ENST00000417586 456 ntBASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 RN7SL618P-201ENST00000477850 296 ntBASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 AC211476.1-201ENST00000503899 468 ntBASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 SDHAP3-202ENST00000515467 728 ntBASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 HSPA7-201ENST00000445535 1927 ntBASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMA1Q9UHB6 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 AC027612.4-201ENST00000605371 583 ntBASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.81■□□□□ 0.28
LIMA1Q9UHB6 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AC063926.3-201ENST00000624734 5658 ntBASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AL360270.3-201ENST00000609118 1348 ntBASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 BX842568.4-201ENST00000421222 227 ntBASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 HLA-J-203ENST00000494367 1087 ntBASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
LIMA1Q9UHB6 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms