Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USP28Q96RU2 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
USP28Q96RU2 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.62■□□□□ 0.41
USP28Q96RU2 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
USP28Q96RU2 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
USP28Q96RU2 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
USP28Q96RU2 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.62■□□□□ 0.41
USP28Q96RU2 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 TSSK5P-201ENST00000423978 907 ntBASIC17.62■□□□□ 0.41
USP28Q96RU2 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.62■□□□□ 0.41
USP28Q96RU2 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.62■□□□□ 0.41
USP28Q96RU2 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.62■□□□□ 0.41
USP28Q96RU2 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP28Q96RU2 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USP28Q96RU2 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
USP28Q96RU2 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC17.61■□□□□ 0.41
USP28Q96RU2 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.61■□□□□ 0.41
USP28Q96RU2 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.61■□□□□ 0.41
USP28Q96RU2 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.61■□□□□ 0.41
USP28Q96RU2 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.61■□□□□ 0.41
USP28Q96RU2 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USP28Q96RU2 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
USP28Q96RU2 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 AP001160.2-201ENST00000596071 487 ntBASIC17.61■□□□□ 0.41
USP28Q96RU2 AL158211.3-201ENST00000607385 239 ntBASIC17.61■□□□□ 0.41
USP28Q96RU2 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USP28Q96RU2 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.61■□□□□ 0.41
USP28Q96RU2 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.61■□□□□ 0.41
USP28Q96RU2 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP28Q96RU2 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 AC114501.2-201ENST00000439631 535 ntBASIC17.6■□□□□ 0.41
USP28Q96RU2 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 SPDYE18-201ENST00000510091 1050 ntBASIC17.6■□□□□ 0.41
USP28Q96RU2 AC092337.1-201ENST00000568699 1129 ntBASIC17.6■□□□□ 0.41
USP28Q96RU2 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.6■□□□□ 0.41
USP28Q96RU2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.6■□□□□ 0.41
USP28Q96RU2 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.6■□□□□ 0.41
USP28Q96RU2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.6■□□□□ 0.41
USP28Q96RU2 AL158212.4-201ENST00000624062 1286 ntBASIC17.6■□□□□ 0.41
USP28Q96RU2 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP28Q96RU2 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.6■□□□□ 0.41
USP28Q96RU2 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USP28Q96RU2 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms