Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AL137783.1-201ENST00000623494 1896 ntBASIC14.85□□□□□ -0.03
VPS13AQ96RL7 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AL583805.1-201ENST00000391389 531 ntBASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AC138696.2-201ENST00000607376 223 ntBASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AC090510.3-201ENST00000615831 821 ntBASIC14.85□□□□□ -0.03
VPS13AQ96RL7 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 HLA-DQB1-202ENST00000399079 1501 ntBASIC14.84□□□□□ -0.03
VPS13AQ96RL7 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AC244197.1-201ENST00000456494 951 ntBASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AC092850.2-201ENST00000623821 2697 ntBASIC14.84□□□□□ -0.03
VPS13AQ96RL7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 BCAS2P2-201ENST00000425064 674 ntBASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AP003398.1-201ENST00000531124 318 ntBASIC14.84□□□□□ -0.03
VPS13AQ96RL7 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS13AQ96RL7 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 NHP2-202ENST00000314397 599 ntTSL 2 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 AC084752.1-201ENST00000509766 622 ntBASIC14.83□□□□□ -0.03
VPS13AQ96RL7 NEU3-207ENST00000534628 746 ntTSL 2 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 MIR4313-201ENST00000580760 101 ntBASIC14.83□□□□□ -0.03
VPS13AQ96RL7 AC005962.1-201ENST00000584100 773 ntBASIC14.83□□□□□ -0.03
VPS13AQ96RL7 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS13AQ96RL7 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 KRT18P9-201ENST00000604826 1300 ntBASIC14.83□□□□□ -0.04
VPS13AQ96RL7 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms