Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.87□□□□□ -0.03
VMP1Q96GC9 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 CICP14-201ENST00000629111 2732 ntBASIC14.86□□□□□ -0.03
VMP1Q96GC9 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 SDHAP3-202ENST00000515467 728 ntBASIC14.86□□□□□ -0.03
VMP1Q96GC9 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 AC009407.1-201ENST00000568958 598 ntBASIC14.86□□□□□ -0.03
VMP1Q96GC9 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 AC069224.1-201ENST00000566372 1715 ntBASIC14.86□□□□□ -0.03
VMP1Q96GC9 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
VMP1Q96GC9 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
VMP1Q96GC9 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AC134407.2-201ENST00000625089 1978 ntBASIC14.85□□□□□ -0.03
VMP1Q96GC9 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 AC139749.1-202ENST00000617529 3139 ntBASIC14.85□□□□□ -0.03
VMP1Q96GC9 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms