Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AL355994.2-201ENST00000447882 704 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 VDAC1P7-201ENST00000462417 847 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 HNRNPA1P13-201ENST00000510646 963 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 GALT-202ENST00000450095 1280 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RRP7BP-205ENST00000566851 833 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 MSTO2P-201ENST00000314835 1709 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC092552.1-201ENST00000547243 906 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC233724.13-201ENST00000598383 410 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LYPD6-201ENST00000334166 4071 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RPS15-212ENST00000593052 629 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 STAT1-201ENST00000361099 4310 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC005562.1-201ENST00000583030 3219 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms