Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.33■□□□□ 0.04
ZNF549Q6P9A3 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 MEIS3P1-201ENST00000495167 958 ntBASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AC135586.1-201ENST00000539323 574 ntBASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AL645728.2-202ENST00000641679 227 ntBASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 CLK3P2-201ENST00000427566 1453 ntBASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 AC013726.1-201ENST00000563747 2285 ntBASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.32■□□□□ 0.04
ZNF549Q6P9A3 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF549Q6P9A3 LINC01101-201ENST00000622953 1884 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms