Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 HMGN1P19-201ENST00000436976 333 ntBASIC16.64■□□□□ 0.25
KRT39Q6A163 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.64■□□□□ 0.25
KRT39Q6A163 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.64■□□□□ 0.25
KRT39Q6A163 API5-211ENST00000534695 560 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 CHCHD2P3-201ENST00000603038 451 ntBASIC16.64■□□□□ 0.25
KRT39Q6A163 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 INTS4P2-202ENST00000614726 2019 ntBASIC16.63■□□□□ 0.25
KRT39Q6A163 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 AL138799.1-201ENST00000448213 1675 ntBASIC16.63■□□□□ 0.25
KRT39Q6A163 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.63■□□□□ 0.25
KRT39Q6A163 AC134915.1-201ENST00000426461 574 ntBASIC16.63■□□□□ 0.25
KRT39Q6A163 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.63■□□□□ 0.25
KRT39Q6A163 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.63■□□□□ 0.25
KRT39Q6A163 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.63■□□□□ 0.25
KRT39Q6A163 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.63■□□□□ 0.25
KRT39Q6A163 AC093813.1-201ENST00000605066 256 ntBASIC16.63■□□□□ 0.25
KRT39Q6A163 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 AC007787.1-201ENST00000588095 1583 ntBASIC16.63■□□□□ 0.25
KRT39Q6A163 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
KRT39Q6A163 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
KRT39Q6A163 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT39Q6A163 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT39Q6A163 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.62■□□□□ 0.25
KRT39Q6A163 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.62■□□□□ 0.25
KRT39Q6A163 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
KRT39Q6A163 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC103702.1-201ENST00000548801 2630 ntBASIC16.62■□□□□ 0.25
KRT39Q6A163 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT39Q6A163 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
KRT39Q6A163 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC098850.1-201ENST00000419919 790 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms