Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCNA1P78396 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCNA1P78396 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNA1P78396 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCNA1P78396 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.36■□□□□ 0.37
CCNA1P78396 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNA1P78396 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CCNA1P78396 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC17.36■□□□□ 0.37
CCNA1P78396 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCNA1P78396 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNA1P78396 AP000593.2-201ENST00000542775 1433 ntBASIC17.36■□□□□ 0.37
CCNA1P78396 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.36■□□□□ 0.37
CCNA1P78396 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.36■□□□□ 0.37
CCNA1P78396 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
CCNA1P78396 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCNA1P78396 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CCNA1P78396 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCNA1P78396 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CCNA1P78396 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.35■□□□□ 0.37
CCNA1P78396 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.35■□□□□ 0.37
CCNA1P78396 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 HLA-K-203ENST00000430151 1046 ntBASIC17.35■□□□□ 0.37
CCNA1P78396 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.35■□□□□ 0.37
CCNA1P78396 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.35■□□□□ 0.37
CCNA1P78396 MSRA-203ENST00000441698 788 ntTSL 2 BASIC17.35■□□□□ 0.37
CCNA1P78396 TMEM198B-204ENST00000484016 896 ntBASIC17.35■□□□□ 0.37
CCNA1P78396 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.35■□□□□ 0.37
CCNA1P78396 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.35■□□□□ 0.37
CCNA1P78396 BNIP3P13-201ENST00000599968 566 ntBASIC17.35■□□□□ 0.37
CCNA1P78396 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.35■□□□□ 0.37
CCNA1P78396 AC004923.1-202ENST00000642106 209 ntBASIC17.35■□□□□ 0.37
CCNA1P78396 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCNA1P78396 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCNA1P78396 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms