Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH6P52701 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
MSH6P52701 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH6P52701 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.95■□□□□ 0.94
MSH6P52701 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 FRMPD2B-201ENST00000431305 1347 ntBASIC20.95■□□□□ 0.94
MSH6P52701 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 AC009093.2-202ENST00000620513 2079 ntBASIC20.95■□□□□ 0.94
MSH6P52701 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH6P52701 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC20.95■□□□□ 0.94
MSH6P52701 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC20.95■□□□□ 0.94
MSH6P52701 DNM1P51-201ENST00000558149 522 ntBASIC20.95■□□□□ 0.94
MSH6P52701 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
MSH6P52701 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
MSH6P52701 AC092299.1-201ENST00000632679 757 ntBASIC20.95■□□□□ 0.94
MSH6P52701 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
MSH6P52701 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH6P52701 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
MSH6P52701 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
MSH6P52701 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
MSH6P52701 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH6P52701 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC20.94■□□□□ 0.94
MSH6P52701 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC20.94■□□□□ 0.94
MSH6P52701 AC026434.2-201ENST00000506094 1078 ntBASIC20.94■□□□□ 0.94
MSH6P52701 ALG1L6P-201ENST00000515248 758 ntBASIC20.94■□□□□ 0.94
MSH6P52701 TMCO5B-205ENST00000530020 894 ntBASIC20.94■□□□□ 0.94
MSH6P52701 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 AP003392.6-201ENST00000607709 325 ntBASIC20.94■□□□□ 0.94
MSH6P52701 Z98259.2-201ENST00000641583 609 ntBASIC20.94■□□□□ 0.94
MSH6P52701 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
MSH6P52701 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH6P52701 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH6P52701 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH6P52701 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.93■□□□□ 0.94
MSH6P52701 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH6P52701 LYPLA2P1-203ENST00000447689 696 ntBASIC20.93■□□□□ 0.94
MSH6P52701 AP000358.1-201ENST00000456260 156 ntBASIC20.93■□□□□ 0.94
MSH6P52701 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
MSH6P52701 AC005962.1-201ENST00000584100 773 ntBASIC20.93■□□□□ 0.94
MSH6P52701 AC138696.2-201ENST00000607376 223 ntBASIC20.93■□□□□ 0.94
MSH6P52701 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH6P52701 AC087392.5-201ENST00000612517 489 ntBASIC20.93■□□□□ 0.94
MSH6P52701 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH6P52701 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 AC084364.1-201ENST00000551967 1556 ntBASIC20.93■□□□□ 0.94
MSH6P52701 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
MSH6P52701 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH6P52701 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH6P52701 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH6P52701 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
MSH6P52701 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.92■□□□□ 0.94
MSH6P52701 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
MSH6P52701 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH6P52701 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms