Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.38■□□□□ 0.05
MSH3P20585 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.38■□□□□ 0.05
MSH3P20585 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.38■□□□□ 0.05
MSH3P20585 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.38■□□□□ 0.05
MSH3P20585 MYCLP2-201ENST00000449268 967 ntBASIC15.38■□□□□ 0.05
MSH3P20585 CRB3P1-201ENST00000449338 276 ntBASIC15.38■□□□□ 0.05
MSH3P20585 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.38■□□□□ 0.05
MSH3P20585 RPL13AP25-201ENST00000484130 612 ntBASIC15.38■□□□□ 0.05
MSH3P20585 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.38■□□□□ 0.05
MSH3P20585 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.38■□□□□ 0.05
MSH3P20585 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
MSH3P20585 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.38■□□□□ 0.05
MSH3P20585 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 AC025181.2-201ENST00000606994 802 ntBASIC15.38■□□□□ 0.05
MSH3P20585 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
MSH3P20585 TNRC18P2-201ENST00000417666 2714 ntBASIC15.38■□□□□ 0.05
MSH3P20585 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
MSH3P20585 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.38■□□□□ 0.05
MSH3P20585 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.38■□□□□ 0.05
MSH3P20585 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
MSH3P20585 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.38■□□□□ 0.05
MSH3P20585 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 AC138035.3-201ENST00000622706 2791 ntBASIC15.37■□□□□ 0.05
MSH3P20585 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
MSH3P20585 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
MSH3P20585 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.37■□□□□ 0.05
MSH3P20585 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.37■□□□□ 0.05
MSH3P20585 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.37■□□□□ 0.05
MSH3P20585 AC027307.3-201ENST00000594262 1100 ntBASIC15.37■□□□□ 0.05
MSH3P20585 AL049840.4-201ENST00000602422 811 ntBASIC15.37■□□□□ 0.05
MSH3P20585 AC008494.3-201ENST00000606615 944 ntBASIC15.37■□□□□ 0.05
MSH3P20585 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms