Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.11■□□□□ 0.01
PCNAP12004 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.11■□□□□ 0.01
PCNAP12004 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.11■□□□□ 0.01
PCNAP12004 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.11■□□□□ 0.01
PCNAP12004 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.11■□□□□ 0.01
PCNAP12004 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.11■□□□□ 0.01
PCNAP12004 AL512361.1-201ENST00000554200 418 ntBASIC15.11■□□□□ 0.01
PCNAP12004 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.11■□□□□ 0.01
PCNAP12004 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.11■□□□□ 0.01
PCNAP12004 AC051619.7-201ENST00000568314 623 ntBASIC15.11■□□□□ 0.01
PCNAP12004 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.11■□□□□ 0.01
PCNAP12004 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.11■□□□□ 0.01
PCNAP12004 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PCNAP12004 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.11■□□□□ 0.01
PCNAP12004 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.11■□□□□ 0.01
PCNAP12004 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.11■□□□□ 0.01
PCNAP12004 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.11■□□□□ 0.01
PCNAP12004 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.11■□□□□ 0.01
PCNAP12004 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
PCNAP12004 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.11■□□□□ 0.01
PCNAP12004 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCNAP12004 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PCNAP12004 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
PCNAP12004 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.1■□□□□ 0.01
PCNAP12004 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.1■□□□□ 0.01
PCNAP12004 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.1■□□□□ 0.01
PCNAP12004 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.1■□□□□ 0.01
PCNAP12004 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.1■□□□□ 0.01
PCNAP12004 MIR943-201ENST00000401286 94 ntBASIC15.1■□□□□ 0.01
PCNAP12004 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.1■□□□□ 0.01
PCNAP12004 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.1■□□□□ 0.01
PCNAP12004 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.1■□□□□ 0.01
PCNAP12004 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.1■□□□□ 0.01
PCNAP12004 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.1■□□□□ 0.01
PCNAP12004 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.1■□□□□ 0.01
PCNAP12004 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.1■□□□□ 0.01
PCNAP12004 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.1■□□□□ 0.01
PCNAP12004 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
PCNAP12004 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.1■□□□□ 0.01
PCNAP12004 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.1■□□□□ 0.01
PCNAP12004 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.1■□□□□ 0.01
PCNAP12004 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCNAP12004 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.09■□□□□ 0.01
PCNAP12004 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PCNAP12004 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.09■□□□□ 0.01
PCNAP12004 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PCNAP12004 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.09■□□□□ 0.01
PCNAP12004 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCNAP12004 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.09■□□□□ 0.01
PCNAP12004 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCNAP12004 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCNAP12004 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCNAP12004 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms