Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 SF1-209ENST00000433274 2317 ntTSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
COL3A1P02461 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.97■□□□□ 0.79
COL3A1P02461 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.97■□□□□ 0.79
COL3A1P02461 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.97■□□□□ 0.79
COL3A1P02461 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC19.97■□□□□ 0.79
COL3A1P02461 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC19.97■□□□□ 0.79
COL3A1P02461 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.97■□□□□ 0.79
COL3A1P02461 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.97■□□□□ 0.79
COL3A1P02461 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC19.97■□□□□ 0.79
COL3A1P02461 AC132192.2-201ENST00000596206 1147 ntBASIC19.97■□□□□ 0.79
COL3A1P02461 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.97■□□□□ 0.79
COL3A1P02461 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.97■□□□□ 0.79
COL3A1P02461 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC19.97■□□□□ 0.79
COL3A1P02461 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL3A1P02461 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL3A1P02461 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC19.96■□□□□ 0.79
COL3A1P02461 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
COL3A1P02461 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL3A1P02461 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL3A1P02461 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 MIR1247-201ENST00000408206 136 ntBASIC19.96■□□□□ 0.79
COL3A1P02461 AC006033.1-201ENST00000440505 426 ntBASIC19.96■□□□□ 0.79
COL3A1P02461 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.96■□□□□ 0.79
COL3A1P02461 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.96■□□□□ 0.79
COL3A1P02461 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.96■□□□□ 0.79
COL3A1P02461 AC007292.2-201ENST00000593524 1812 ntBASIC19.96■□□□□ 0.79
COL3A1P02461 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL3A1P02461 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL3A1P02461 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC19.95■□□□□ 0.78
COL3A1P02461 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
COL3A1P02461 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
COL3A1P02461 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.95■□□□□ 0.78
COL3A1P02461 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
COL3A1P02461 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
COL3A1P02461 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
COL3A1P02461 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.95■□□□□ 0.78
COL3A1P02461 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.95■□□□□ 0.78
COL3A1P02461 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC19.95■□□□□ 0.78
COL3A1P02461 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 LINC01101-201ENST00000622953 1884 ntBASIC19.95■□□□□ 0.78
COL3A1P02461 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.95■□□□□ 0.78
COL3A1P02461 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC19.95■□□□□ 0.78
COL3A1P02461 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC19.95■□□□□ 0.78
COL3A1P02461 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.95■□□□□ 0.78
COL3A1P02461 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC19.95■□□□□ 0.78
COL3A1P02461 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL3A1P02461 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms