Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA1O95477 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA1O95477 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA1O95477 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA1O95477 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA1O95477 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA1O95477 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
ABCA1O95477 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 BTBD6P1-201ENST00000412176 1267 ntBASIC12.99□□□□□ -0.33
ABCA1O95477 ACTG1P17-201ENST00000558391 1119 ntBASIC12.99□□□□□ -0.33
ABCA1O95477 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA1O95477 CLUHP6-201ENST00000580789 941 ntBASIC12.99□□□□□ -0.33
ABCA1O95477 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 HCG18-245ENST00000602550 559 ntTSL 4 BASIC12.99□□□□□ -0.33
ABCA1O95477 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA1O95477 AC138951.2-201ENST00000623455 1161 ntBASIC12.99□□□□□ -0.33
ABCA1O95477 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.99□□□□□ -0.33
ABCA1O95477 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
ABCA1O95477 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
ABCA1O95477 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
ABCA1O95477 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA1O95477 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA1O95477 AC106760.1-201ENST00000508690 800 ntBASIC12.99□□□□□ -0.33
ABCA1O95477 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA1O95477 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA1O95477 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA1O95477 PRKN-211ENST00000615065 261 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA1O95477 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA1O95477 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.99□□□□□ -0.33
ABCA1O95477 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA1O95477 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.98□□□□□ -0.33
ABCA1O95477 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA1O95477 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC12.98□□□□□ -0.33
ABCA1O95477 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC12.98□□□□□ -0.33
ABCA1O95477 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC12.98□□□□□ -0.33
ABCA1O95477 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
ABCA1O95477 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.98□□□□□ -0.33
ABCA1O95477 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
ABCA1O95477 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
ABCA1O95477 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms