Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 KLF2P3-201ENST00000451977 1087 ntBASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AC120057.1-201ENST00000483947 663 ntBASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AC069120.2-201ENST00000524091 540 ntBASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AF228730.6-201ENST00000641497 218 ntBASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AC084121.3-201ENST00000641716 218 ntBASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIF3AQ9Y2N7 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 FGD5P1-202ENST00000614866 2498 ntBASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 AL121723.1-201ENST00000445194 1519 ntBASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 MIR1233-2-201ENST00000408138 82 ntBASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 MIR1233-1-201ENST00000408722 82 ntBASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 SDHAP3-202ENST00000515467 728 ntBASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 ZNF890P-202ENST00000530367 1156 ntBASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 AC140878.1-201ENST00000565277 250 ntBASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms