Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 PPT1-213ENST00000641319 2388 ntBASIC13.73□□□□□ -0.21
MMP28Q9H239 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
MMP28Q9H239 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.73□□□□□ -0.21
MMP28Q9H239 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.73□□□□□ -0.21
MMP28Q9H239 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.73□□□□□ -0.21
MMP28Q9H239 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.73□□□□□ -0.21
MMP28Q9H239 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 AC131009.4-201ENST00000624048 1740 ntBASIC13.73□□□□□ -0.21
MMP28Q9H239 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
MMP28Q9H239 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MMP28Q9H239 CR383656.2-201ENST00000548656 2254 ntBASIC13.73□□□□□ -0.21
MMP28Q9H239 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 HCG4-201ENST00000418983 998 ntBASIC13.72□□□□□ -0.21
MMP28Q9H239 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 CXCL1P1-201ENST00000502804 216 ntBASIC13.72□□□□□ -0.21
MMP28Q9H239 PGAM5P1-201ENST00000518923 814 ntBASIC13.72□□□□□ -0.21
MMP28Q9H239 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.72□□□□□ -0.21
MMP28Q9H239 AC034105.1-201ENST00000563488 319 ntBASIC13.72□□□□□ -0.21
MMP28Q9H239 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.72□□□□□ -0.21
MMP28Q9H239 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC13.72□□□□□ -0.21
MMP28Q9H239 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MMP28Q9H239 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.72□□□□□ -0.21
MMP28Q9H239 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.72□□□□□ -0.21
MMP28Q9H239 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms