Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 AL390755.1-201ENST00000623716 2027 ntBASIC13.56□□□□□ -0.24
NKX3-1Q99801 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 MCCD1P2-201ENST00000423228 335 ntBASIC13.56□□□□□ -0.24
NKX3-1Q99801 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 TIMM8BP1-201ENST00000452384 211 ntBASIC13.56□□□□□ -0.24
NKX3-1Q99801 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SNHG9-202ENST00000564014 471 ntBASIC13.56□□□□□ -0.24
NKX3-1Q99801 MIR4469-201ENST00000583919 79 ntBASIC13.56□□□□□ -0.24
NKX3-1Q99801 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.56□□□□□ -0.24
NKX3-1Q99801 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
NKX3-1Q99801 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NKX3-1Q99801 AC097359.2-201ENST00000604992 2389 ntBASIC13.56□□□□□ -0.24
NKX3-1Q99801 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 AC140479.7-201ENST00000636301 2332 ntBASIC13.55□□□□□ -0.24
NKX3-1Q99801 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 HTR5BP-201ENST00000430851 1154 ntBASIC13.55□□□□□ -0.24
NKX3-1Q99801 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 AC079140.1-201ENST00000508039 487 ntBASIC13.55□□□□□ -0.24
NKX3-1Q99801 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.55□□□□□ -0.24
NKX3-1Q99801 SLC25A39P2-201ENST00000537614 270 ntBASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms