Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 AC067750.1-201ENST00000608826 6545 ntBASIC16.71■□□□□ 0.27
CCDC42Q96M95 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 AC003101.2-201ENST00000612557 442 ntBASIC16.71■□□□□ 0.27
CCDC42Q96M95 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC42Q96M95 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
CCDC42Q96M95 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.71■□□□□ 0.26
CCDC42Q96M95 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.7■□□□□ 0.26
CCDC42Q96M95 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC42Q96M95 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CCDC42Q96M95 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 KRT8P12-202ENST00000472924 1397 ntBASIC16.69■□□□□ 0.26
CCDC42Q96M95 AC015656.1-201ENST00000624209 3578 ntBASIC16.69■□□□□ 0.26
CCDC42Q96M95 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC42Q96M95 KRT18P32-201ENST00000424695 1287 ntBASIC16.69■□□□□ 0.26
CCDC42Q96M95 AC004832.2-201ENST00000426397 482 ntBASIC16.69■□□□□ 0.26
CCDC42Q96M95 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC42Q96M95 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms