Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 AJ011932.1-201ENST00000621707 465 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 AC026748.1-201ENST00000624349 3251 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 PPT1-215ENST00000641471 2368 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 BCRP1-201ENST00000444246 691 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 TSPY16P-201ENST00000449843 468 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 AL096865.1-201ENST00000606796 927 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC004790.1-201ENST00000612686 536 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC005089.1-201ENST00000619486 2241 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC138969.3-201ENST00000546612 1459 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC138932.2-201ENST00000548268 1459 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC126755.4-201ENST00000549796 1459 ntBASIC13.72□□□□□ -0.21
SKA3Q8IX90 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SKA3Q8IX90 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SKA3Q8IX90 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms