Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
VPS13DQ5THJ4 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC10.07□□□□□ -0.8
VPS13DQ5THJ4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
VPS13DQ5THJ4 AL031713.1-201ENST00000564813 661 ntBASIC10.07□□□□□ -0.8
VPS13DQ5THJ4 AC027601.3-201ENST00000622907 509 ntBASIC10.07□□□□□ -0.8
VPS13DQ5THJ4 AC073911.3-201ENST00000624401 631 ntBASIC10.07□□□□□ -0.8
VPS13DQ5THJ4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
VPS13DQ5THJ4 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AL627231.1-201ENST00000394467 1125 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 PUDPP3-201ENST00000445368 636 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AL512306.1-201ENST00000432698 848 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AC130709.1-201ENST00000484779 1212 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AC106794.1-201ENST00000506935 792 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AC027139.1-201ENST00000565286 951 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 BID-213ENST00000615414 2236 ntTSL 5 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 AC023090.2-201ENST00000625182 2110 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 CICP13-201ENST00000422015 2789 ntBASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
VPS13DQ5THJ4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 RN7SL596P-201ENST00000582123 288 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AC099398.1-201ENST00000567919 2776 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 NCR3-202ENST00000376071 541 ntTSL 5 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 DNAJB1P1-201ENST00000429417 1024 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 NOC2LP1-201ENST00000450578 752 ntBASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
VPS13DQ5THJ4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms