Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.41□□□□□ -0.1
FOXC1Q12948 DDX39AP1-201ENST00000445147 1181 ntBASIC14.41□□□□□ -0.1
FOXC1Q12948 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC14.41□□□□□ -0.1
FOXC1Q12948 RPL18AP3-201ENST00000462885 528 ntBASIC14.41□□□□□ -0.1
FOXC1Q12948 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.41□□□□□ -0.1
FOXC1Q12948 FAM86KP-201ENST00000509817 987 ntBASIC14.41□□□□□ -0.1
FOXC1Q12948 ALG1L6P-201ENST00000515248 758 ntBASIC14.41□□□□□ -0.1
FOXC1Q12948 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.41□□□□□ -0.1
FOXC1Q12948 MIR3677-201ENST00000578964 60 ntBASIC14.41□□□□□ -0.1
FOXC1Q12948 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.41□□□□□ -0.1
FOXC1Q12948 AC002472.3-201ENST00000640124 621 ntBASIC14.41□□□□□ -0.1
FOXC1Q12948 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXC1Q12948 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXC1Q12948 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXC1Q12948 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXC1Q12948 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
FOXC1Q12948 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 AC141586.5-201ENST00000624546 2050 ntBASIC14.4□□□□□ -0.1
FOXC1Q12948 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXC1Q12948 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 C20orf85-201ENST00000371168 803 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXC1Q12948 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXC1Q12948 HLA-J-204ENST00000495278 958 ntBASIC14.4□□□□□ -0.1
FOXC1Q12948 AC012158.2-201ENST00000536546 354 ntBASIC14.4□□□□□ -0.1
FOXC1Q12948 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXC1Q12948 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXC1Q12948 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXC1Q12948 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC14.4□□□□□ -0.1
FOXC1Q12948 AC107464.3-201ENST00000609172 737 ntBASIC14.4□□□□□ -0.1
FOXC1Q12948 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
FOXC1Q12948 LINC00431-202ENST00000636375 159 ntBASIC14.4□□□□□ -0.1
FOXC1Q12948 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
FOXC1Q12948 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXC1Q12948 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXC1Q12948 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
FOXC1Q12948 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
FOXC1Q12948 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 KRT8P21-201ENST00000430398 1491 ntBASIC14.39□□□□□ -0.11
FOXC1Q12948 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
FOXC1Q12948 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 SHC1P1-201ENST00000425230 1745 ntBASIC14.39□□□□□ -0.11
FOXC1Q12948 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXC1Q12948 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXC1Q12948 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXC1Q12948 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXC1Q12948 DUX4L46-201ENST00000566845 751 ntBASIC14.39□□□□□ -0.11
FOXC1Q12948 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.39□□□□□ -0.11
FOXC1Q12948 MIR5196-201ENST00000578146 115 ntBASIC14.39□□□□□ -0.11
FOXC1Q12948 EIF5AP2-201ENST00000585668 1047 ntBASIC14.39□□□□□ -0.11
FOXC1Q12948 HKR1-225ENST00000592168 566 ntTSL 4 BASIC14.39□□□□□ -0.11
FOXC1Q12948 AC004466.1-201ENST00000599515 1080 ntBASIC14.39□□□□□ -0.11
FOXC1Q12948 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXC1Q12948 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXC1Q12948 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXC1Q12948 AC005052.1-201ENST00000625181 2492 ntBASIC14.39□□□□□ -0.11
FOXC1Q12948 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms