Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.32□□□□□ -0.28
AP3S2P59780 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.32□□□□□ -0.28
AP3S2P59780 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.32□□□□□ -0.28
AP3S2P59780 AC008667.4-201ENST00000607370 168 ntBASIC13.32□□□□□ -0.28
AP3S2P59780 AC012306.2-201ENST00000609350 630 ntBASIC13.32□□□□□ -0.28
AP3S2P59780 AL078644.1-201ENST00000609881 752 ntBASIC13.32□□□□□ -0.28
AP3S2P59780 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.32□□□□□ -0.28
AP3S2P59780 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC13.32□□□□□ -0.28
AP3S2P59780 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AP3S2P59780 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
AP3S2P59780 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
AP3S2P59780 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.31□□□□□ -0.28
AP3S2P59780 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
AP3S2P59780 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC13.31□□□□□ -0.28
AP3S2P59780 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
AP3S2P59780 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.31□□□□□ -0.28
AP3S2P59780 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC13.31□□□□□ -0.28
AP3S2P59780 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC13.31□□□□□ -0.28
AP3S2P59780 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 FAM185BP-201ENST00000443595 716 ntBASIC13.31□□□□□ -0.28
AP3S2P59780 SCARNA2-201ENST00000458748 420 ntBASIC13.31□□□□□ -0.28
AP3S2P59780 AC109635.5-201ENST00000533593 962 ntBASIC13.31□□□□□ -0.28
AP3S2P59780 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.31□□□□□ -0.28
AP3S2P59780 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.31□□□□□ -0.28
AP3S2P59780 AC024267.1-201ENST00000582320 895 ntBASIC13.31□□□□□ -0.28
AP3S2P59780 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.31□□□□□ -0.28
AP3S2P59780 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.31□□□□□ -0.28
AP3S2P59780 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.31□□□□□ -0.28
AP3S2P59780 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.31□□□□□ -0.28
AP3S2P59780 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.31□□□□□ -0.28
AP3S2P59780 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
AP3S2P59780 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.31□□□□□ -0.28
AP3S2P59780 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.3□□□□□ -0.28
AP3S2P59780 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.3□□□□□ -0.28
AP3S2P59780 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.3□□□□□ -0.28
AP3S2P59780 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
AP3S2P59780 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
AP3S2P59780 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
AP3S2P59780 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.3□□□□□ -0.28
AP3S2P59780 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.3□□□□□ -0.28
AP3S2P59780 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.3□□□□□ -0.28
AP3S2P59780 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
AP3S2P59780 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
AP3S2P59780 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.3□□□□□ -0.28
AP3S2P59780 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms