Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 AC087499.5-201ENST00000452760 1342 ntBASIC14.72□□□□□ -0.05
SDC1P18827 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.72□□□□□ -0.05
SDC1P18827 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SDC1P18827 AC107890.1-201ENST00000422478 521 ntBASIC14.72□□□□□ -0.05
SDC1P18827 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 AC092580.3-201ENST00000430932 139 ntBASIC14.72□□□□□ -0.05
SDC1P18827 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.72□□□□□ -0.05
SDC1P18827 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.72□□□□□ -0.05
SDC1P18827 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.72□□□□□ -0.05
SDC1P18827 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.72□□□□□ -0.05
SDC1P18827 AC025678.2-201ENST00000562061 970 ntBASIC14.72□□□□□ -0.05
SDC1P18827 AC004449.1-201ENST00000564240 433 ntBASIC14.72□□□□□ -0.05
SDC1P18827 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SDC1P18827 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.72□□□□□ -0.05
SDC1P18827 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SDC1P18827 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
SDC1P18827 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.71□□□□□ -0.05
SDC1P18827 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 AC007191.1-201ENST00000623179 2995 ntBASIC14.71□□□□□ -0.05
SDC1P18827 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 AC026748.1-201ENST00000624349 3251 ntBASIC14.71□□□□□ -0.05
SDC1P18827 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.71□□□□□ -0.05
SDC1P18827 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.71□□□□□ -0.05
SDC1P18827 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
SDC1P18827 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SDC1P18827 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SDC1P18827 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SDC1P18827 MIR1233-2-201ENST00000408138 82 ntBASIC14.71□□□□□ -0.05
SDC1P18827 MIR1233-1-201ENST00000408722 82 ntBASIC14.71□□□□□ -0.05
SDC1P18827 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SDC1P18827 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.71□□□□□ -0.05
SDC1P18827 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.71□□□□□ -0.05
SDC1P18827 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.71□□□□□ -0.05
SDC1P18827 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
SDC1P18827 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
SDC1P18827 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.71□□□□□ -0.05
SDC1P18827 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.71□□□□□ -0.05
SDC1P18827 AC000095.1-201ENST00000603208 874 ntBASIC14.71□□□□□ -0.05
SDC1P18827 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SDC1P18827 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.71□□□□□ -0.05
SDC1P18827 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.71□□□□□ -0.05
SDC1P18827 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.71□□□□□ -0.05
SDC1P18827 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SDC1P18827 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SDC1P18827 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
SDC1P18827 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
SDC1P18827 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.71□□□□□ -0.06
SDC1P18827 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SDC1P18827 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
SDC1P18827 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
SDC1P18827 SNX18-202ENST00000343017 3140 ntBASIC14.7□□□□□ -0.06
SDC1P18827 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.7□□□□□ -0.06
SDC1P18827 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms