Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
APOEP02649 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
APOEP02649 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.22■□□□□ 0.19
APOEP02649 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.22■□□□□ 0.19
APOEP02649 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.22■□□□□ 0.19
APOEP02649 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.22■□□□□ 0.19
APOEP02649 AC000095.1-201ENST00000603208 874 ntBASIC16.22■□□□□ 0.19
APOEP02649 AL358472.5-202ENST00000641448 1267 ntBASIC16.22■□□□□ 0.19
APOEP02649 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.22■□□□□ 0.19
APOEP02649 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.22■□□□□ 0.19
APOEP02649 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.22■□□□□ 0.19
APOEP02649 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.22■□□□□ 0.19
APOEP02649 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.22■□□□□ 0.19
APOEP02649 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
APOEP02649 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
APOEP02649 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOEP02649 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.21■□□□□ 0.19
APOEP02649 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
APOEP02649 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.21■□□□□ 0.19
APOEP02649 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.21■□□□□ 0.19
APOEP02649 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
APOEP02649 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.21■□□□□ 0.19
APOEP02649 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
APOEP02649 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
APOEP02649 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC16.21■□□□□ 0.19
APOEP02649 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.21■□□□□ 0.19
APOEP02649 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.21■□□□□ 0.19
APOEP02649 RPL13AP25-201ENST00000484130 612 ntBASIC16.21■□□□□ 0.19
APOEP02649 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.21■□□□□ 0.19
APOEP02649 AC025048.6-201ENST00000634326 1161 ntBASIC16.21■□□□□ 0.19
APOEP02649 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
APOEP02649 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
APOEP02649 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.21■□□□□ 0.18
APOEP02649 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.21■□□□□ 0.18
APOEP02649 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
APOEP02649 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
APOEP02649 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
APOEP02649 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.21■□□□□ 0.18
APOEP02649 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
APOEP02649 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
APOEP02649 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
APOEP02649 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
APOEP02649 AC138035.3-201ENST00000622706 2791 ntBASIC16.21■□□□□ 0.18
APOEP02649 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
APOEP02649 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.2■□□□□ 0.18
APOEP02649 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
APOEP02649 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
APOEP02649 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
APOEP02649 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
APOEP02649 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
APOEP02649 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.2■□□□□ 0.18
APOEP02649 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.2■□□□□ 0.18
APOEP02649 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.2■□□□□ 0.18
APOEP02649 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.2■□□□□ 0.18
APOEP02649 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.2■□□□□ 0.18
APOEP02649 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.2■□□□□ 0.18
APOEP02649 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.2■□□□□ 0.18
APOEP02649 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
APOEP02649 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
APOEP02649 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
APOEP02649 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOEP02649 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
APOEP02649 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms