Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 FUOM-202ENST00000368551 628 ntTSL 3 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 FOSL1P1-201ENST00000511041 816 ntBASIC11.69□□□□□ -0.54
HLA-DQA1P01909 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 AL591122.2-201ENST00000624125 1853 ntBASIC11.69□□□□□ -0.54
HLA-DQA1P01909 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DQA1P01909 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 INTS4P1-201ENST00000438455 1935 ntBASIC11.68□□□□□ -0.54
HLA-DQA1P01909 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 AP001267.2-201ENST00000532619 2086 ntBASIC11.68□□□□□ -0.54
HLA-DQA1P01909 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 IGHV3-47-201ENST00000425060 335 ntBASIC11.68□□□□□ -0.54
HLA-DQA1P01909 NMU-205ENST00000511469 756 ntTSL 3 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 PRR29-207ENST00000580752 458 ntTSL 3 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DQA1P01909 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms