Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC12.51□□□□□ -0.41
HMGB3O15347 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC12.51□□□□□ -0.41
HMGB3O15347 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC12.51□□□□□ -0.41
HMGB3O15347 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC12.51□□□□□ -0.41
HMGB3O15347 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 MMP17-203ENST00000535004 719 ntTSL 3 BASIC12.51□□□□□ -0.41
HMGB3O15347 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC12.51□□□□□ -0.41
HMGB3O15347 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
HMGB3O15347 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC12.51□□□□□ -0.41
HMGB3O15347 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC12.51□□□□□ -0.41
HMGB3O15347 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC12.51□□□□□ -0.41
HMGB3O15347 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 AL805961.1-202ENST00000641562 540 ntBASIC12.51□□□□□ -0.41
HMGB3O15347 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 AC006504.5-208ENST00000588784 2401 ntBASIC12.51□□□□□ -0.41
HMGB3O15347 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 CYP51A1P2-201ENST00000419457 1499 ntBASIC12.51□□□□□ -0.41
HMGB3O15347 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 PDK1-201ENST00000282077 14193 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
HMGB3O15347 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HMGB3O15347 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.51□□□□□ -0.41
HMGB3O15347 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 COL11A1-210ENST00000512756 5442 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 GOLGA4-202ENST00000361924 7772 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 HERC2P3-204ENST00000426501 5995 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC12.5□□□□□ -0.41
HMGB3O15347 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 RNF151-202ENST00000569210 853 ntTSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC12.5□□□□□ -0.41
HMGB3O15347 CYB561-216ENST00000582297 897 ntTSL 3 BASIC12.5□□□□□ -0.41
HMGB3O15347 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC12.5□□□□□ -0.41
HMGB3O15347 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC12.5□□□□□ -0.41
HMGB3O15347 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 AC127383.1-201ENST00000444697 1800 ntBASIC12.5□□□□□ -0.41
HMGB3O15347 DAG1-218ENST00000515359 5576 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.5□□□□□ -0.41
HMGB3O15347 BCL9-201ENST00000234739 6278 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
HMGB3O15347 DPYSL5-207ENST00000614712 5128 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HMGB3O15347 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HMGB3O15347 GREB1L-209ENST00000580732 8749 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms