Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
FOXN3O00409 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXN3O00409 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXN3O00409 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXN3O00409 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
FOXN3O00409 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXN3O00409 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
FOXN3O00409 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
FOXN3O00409 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
FOXN3O00409 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
FOXN3O00409 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
FOXN3O00409 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
FOXN3O00409 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
FOXN3O00409 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.52■□□□□ 0.24
FOXN3O00409 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.52■□□□□ 0.24
FOXN3O00409 GAPDHP40-201ENST00000505218 1006 ntBASIC16.52■□□□□ 0.24
FOXN3O00409 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.52■□□□□ 0.24
FOXN3O00409 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.52■□□□□ 0.24
FOXN3O00409 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.52■□□□□ 0.24
FOXN3O00409 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.52■□□□□ 0.24
FOXN3O00409 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXN3O00409 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXN3O00409 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXN3O00409 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
FOXN3O00409 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
FOXN3O00409 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
FOXN3O00409 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
FOXN3O00409 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXN3O00409 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
FOXN3O00409 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXN3O00409 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXN3O00409 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
FOXN3O00409 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXN3O00409 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.51■□□□□ 0.23
FOXN3O00409 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXN3O00409 AC023310.3-201ENST00000557027 670 ntBASIC16.51■□□□□ 0.23
FOXN3O00409 AC100756.1-201ENST00000562736 682 ntBASIC16.51■□□□□ 0.23
FOXN3O00409 RARRES2P5-201ENST00000564013 466 ntBASIC16.51■□□□□ 0.23
FOXN3O00409 AC138749.3-201ENST00000567691 622 ntBASIC16.51■□□□□ 0.23
FOXN3O00409 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXN3O00409 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXN3O00409 AC116165.1-201ENST00000611806 668 ntBASIC16.51■□□□□ 0.23
FOXN3O00409 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXN3O00409 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXN3O00409 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
FOXN3O00409 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXN3O00409 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXN3O00409 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms