Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM49D1C9J1S8 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 SPDYE17-201ENST00000412399 783 ntBASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 ALG1L8P-201ENST00000533887 760 ntBASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 C20orf181-201ENST00000623918 480 ntBASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM49D1C9J1S8 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 LINC01230-201ENST00000625222 3017 ntBASIC15.52■□□□□ 0.07
TRIM49D1C9J1S8 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms