Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 U91328.1-201ENST00000437528 223 ntBASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 TTTY23B-201ENST00000442790 549 ntBASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 RPL13AP25-201ENST00000484130 612 ntBASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 AC133539.2-201ENST00000604757 467 ntBASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL4A3BPQ9Y5P4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 INTS4P2-202ENST00000614726 2019 ntBASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 AL359711.2-201ENST00000563105 872 ntBASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
COL4A3BPQ9Y5P4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 KRT8P44-201ENST00000441609 1350 ntBASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.27■□□□□ 0.35
COL4A3BPQ9Y5P4 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 AC011270.2-201ENST00000624293 2550 ntBASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 AC134915.1-201ENST00000426461 574 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms